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Report for CCDS21860.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21860.1 Public Mus musculus 7 Zfp553 23 108 98 CCDS HistoryNCBI Gene:233887Re-query CCDS DB by CCDS ID:21860.1Re-query CCDS DB by GeneID:233887See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21860.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000056232.6 ENSMUSP00000060967.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000056232.6Link to Ensembl Protein Viewer:ENSMUSP00000060967.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000056232Re-query CCDS DB by Protein ID:ENSMUSP00000060967
Original member Current member EBI ENSMUST00000106312.3 ENSMUSP00000101919.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000106312.3Link to Ensembl Protein Viewer:ENSMUSP00000101919.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000106312Re-query CCDS DB by Protein ID:ENSMUSP00000101919
Original member Current member NCBI NM_001360912.1 NP_001347841.1 Accepted alive Link to Nucleotide Sequence:NM_001360912.1Link to Protein Sequence:NP_001347841.1Re-query CCDS DB by Nucleotide ID:NM_001360912Re-query CCDS DB by Protein ID:NP_001347841Link to BLAST:NP_001347841.1
Original member Current member NCBI NM_146201.2 NP_666313.1 Accepted alive Link to Nucleotide Sequence:NM_146201.2Link to Protein Sequence:NP_666313.1Re-query CCDS DB by Nucleotide ID:NM_146201Re-query CCDS DB by Protein ID:NP_666313Link to BLAST:NP_666313.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001347841.1 591 Q3US17 591 100% 0 0
NP_666313.1 591 Q3US17 591 100% 0 0

Chromosomal Locations for CCDS 21860.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 127235275 127237050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1776 nt):
ATGGAGGCTTCTCCGGGGGATGAGTTTGAACACTCACCACAAGAGAGGGATGGCCCAGAGATCAAGGAAG
AGGAACAGTTAGCCCCAACTCTCCAAGTAGGAAACACTTCTCTCAAACCCGATGGCATTCAGTGCTGGGA
TGATTTATGGGACCGCAGAGAGGGGCTTGGAAAGCGACAGCCTCGAGACCCAGTCCCCCGGATTCTGGGA
GAACCCCGGTGGGGACAGGGCAGTAATGACCGAGCTGCTGTGTGTGGTGAGTGTGGCAAGAGTTTCAGGC
AGATGTCTGATTTGGTGAAACACCAGAGGACGCACACAGGGGAGAAGCCCTACAAGTGTGGCGTCTGTGG
CAAGGGCTTTGGGGACAGCTCAGCCCGAATCAAACATCAGCGAACTCACACTGGAGAGAAGGCCTACAGG
GTCCGGCCACCGGCCCCAGGTCCTCCCAAGATGCCTCGATCTCGGATTCCTGCTGGTGAACGCCCCACGA
TCTGTGGCGAGTGTGGCAAGAGCTTCCGGCAGAGCTCTGACCTGGTCAAACACCAGCGGACGCACACAGG
AGAGAAGCCCTACAAGTGTGGCATCTGTGGCAAGGGCTTTGGGGACAGTTCAGCCCGAATAAAGCACCAG
CGGACACACAGAGGGGATCAGCTGCCCCGGCCAGTGGTTCCCCGACGGCAGCCATCCCCGGCAGCTCCGG
CGGCTCCACACAGACCCAAGGCCCAGGACAAGCCGTATATCTGCACCGACTGCGGCAAAAGGTTTGTGCT
CAGCTGCAGCCTGCTGAGCCACCAACGGAGTCACTTAGGCCCCAAACCCTTCGGTTGTGATGTGTGTGGA
AAGGAGTTTGCGCGGGGCTCTGACCTGGTGAAACATCTGCGGGTACACACAGGTGAGAAGCCCTACCTGT
GCCCTGAGTGTGGCAAAGGCTTTGCTGATAGCTCCGCCCGGGTGAAGCATCTCCGCACCCACAGCGGCCA
GAGGCCTCACGCCTGCCCAGAGTGTAACCGTAGCTTTAGCCTCAGCTCCACTCTTCTTCGCCATCGCCTC
ACCCATGTGGAGCCCCAGGACTTCAGTCTCGCAGCCTACCCCGTGGTCCCGCTCATCCCCAGCCCTCCTC
CACCTCCTCTCGGCACCAGCCCCTCACTGACGCCTCGGAGCCCTTCACACTCCAGTGATGGGCCTTTTGG
CCTACCTGGCTTGGAACCAGAGCCTGGGGGCCCGCAGGCTGGGGAGCCGCCCCCACCTCTGGCAGGTGAC
AAGCCCCACAAGTGTCCTGAGTGTGGCAAAGGTTTCCGACGAAGCTCTGATCTGGTGAAACACCATCGTG
TGCACACAGGGGAGAAACCCTACCTCTGCCCTGAGTGTGGCAAAGGCTTTGCTGACAGTTCTGCCCGAGT
CAAACACCTCCGCACCCACCAGGGCGAACGCACTAGACCACCACCACCACCATCTACTCTCCTGCGGCCC
CATAATCCACCTGGTTCTGTACCCATTGTCCCTCAGTCTCGAGTGCAGGGTCGGCCCTCCGGACCCAGCC
AGCTTCACGTGTGTGGCTTCTGTGGGAAAGAGTTCCCCCGGAGCTCAGATTTAGTCAAACACAGGCGTAC
ACATACCGGGGAGAAGCCATACAAATGTGCAGAATGTGGTAAGGGCTTTGGTGACAGCTCTGCTCGAATA
AAGCACCAGCGTGGGCATCTGGCCTTAAAGCCCTTTGGGGTGGGGGATGGTCCGCCAAGGCCCCTTAAGG
AGGAGTCACCAGCTGGACTGGAGTGA

Translation (591 aa):
MEASPGDEFEHSPQERDGPEIKEEEQLAPTLQVGNTSLKPDGIQCWDDLWDRREGLGKRQPRDPVPRILG
EPRWGQGSNDRAAVCGECGKSFRQMSDLVKHQRTHTGEKPYKCGVCGKGFGDSSARIKHQRTHTGEKAYR
VRPPAPGPPKMPRSRIPAGERPTICGECGKSFRQSSDLVKHQRTHTGEKPYKCGICGKGFGDSSARIKHQ
RTHRGDQLPRPVVPRRQPSPAAPAAPHRPKAQDKPYICTDCGKRFVLSCSLLSHQRSHLGPKPFGCDVCG
KEFARGSDLVKHLRVHTGEKPYLCPECGKGFADSSARVKHLRTHSGQRPHACPECNRSFSLSSTLLRHRL
THVEPQDFSLAAYPVVPLIPSPPPPPLGTSPSLTPRSPSHSSDGPFGLPGLEPEPGGPQAGEPPPPLAGD
KPHKCPECGKGFRRSSDLVKHHRVHTGEKPYLCPECGKGFADSSARVKHLRTHQGERTRPPPPPSTLLRP
HNPPGSVPIVPQSRVQGRPSGPSQLHVCGFCGKEFPRSSDLVKHRRTHTGEKPYKCAECGKGFGDSSARI
KHQRGHLALKPFGVGDGPPRPLKEESPAGLE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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