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Report for CCDS21748.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21748.1 Public Mus musculus 7 Lyve1 23 108 98 CCDS HistoryNCBI Gene:114332Re-query CCDS DB by CCDS ID:21748.1Re-query CCDS DB by GeneID:114332See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21748.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000033050.4 ENSMUSP00000033050.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000033050.4Link to Ensembl Protein Viewer:ENSMUSP00000033050.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000033050Re-query CCDS DB by Protein ID:ENSMUSP00000033050
Original member Current member NCBI NM_053247.4 NP_444477.2 Accepted alive Link to Nucleotide Sequence:NM_053247.4Link to Protein Sequence:NP_444477.2Re-query CCDS DB by Nucleotide ID:NM_053247Re-query CCDS DB by Protein ID:NP_444477Link to BLAST:NP_444477.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444477.2 318 Q8BHC0 318 100% 0 0

Chromosomal Locations for CCDS 21748.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 110852172 110852358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110852829 110852907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110853697 110853993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110859361 110859500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110859590 110859758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 110862784 110862868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (957 nt):
ATGCTCCAGCACACTAGCCTGGTGTTACTCCTCGCCTCTATTTGGACCACTAGGCACCCAGTCCAAGGTG
CCGACCTCGTGCAAGACCTTTCCATTTCTACATGCAGAATCATGGGCGTTGCCCTTGTGGGCAGAAACAA
AAACCCACAGATGAATTTCACAGAAGCCAACGAGGCCTGTAAGATGCTGGGACTGACTCTGGCCAGCAGG
GACCAGGTAGAGTCAGCGCAGAAATCTGGCTTTGAGACTTGCAGCTATGGATGGGTTGGAGAACAGTTCT
CTGTCATCCCTCGGATTTTCTCAAACCCCAGGTGTGGGAAGAATGGCAAAGGTGTCCTGATTTGGAATGC
TCCCTCCAGCCAAAAGTTCAAAGCCTATTGCCACAACTCATCCGACACCTGGGTTAACTCCTGCATTCCA
GAAATCGTTACCACATTTTACCCCGTGTTGGACACTCAAACACCCGCAACAGAGTTTTCTGTCAGCAGCA
GCGCCTACTTGGCTTCATCCCCTGACTCCACAACACCTGTTTCTGCCACCACCCGGGCTCCACCTTTGAC
CTCCATGGCACGGAAGACAAAAAAGATTTGTATCACGGAAGTTTATACAGAACCTATCACCATGGCTACA
GAAACAGAAGCATTTGTTGCAAGTGGAGCAGCATTCAAGAACGAAGCAGCTGGGTTTGGAGGTGTCCCCA
CCGCCCTGCTGGTGCTGGCTCTCCTCTTCTTTGGTGCTGCCGCTGTGCTGGCTGTTTGCTACGTGAAAAG
GTATGTGAAGGCCTTCCCTTTCACAACCAAGAATCAACAGAAGGAAATGATCGAAACCAAGGTTGTAAAG
GAAGAGAAGGCTGATGACGTCAACGCTAATGAAGAATCAAAGAAAACCATTAAAAACCCAGAGGAGGCCA
AGAGTCCACCCAAAACTACGGTGCGATGCTTAGAAGCTGAAGTTTAG

Translation (318 aa):
MLQHTSLVLLLASIWTTRHPVQGADLVQDLSISTCRIMGVALVGRNKNPQMNFTEANEACKMLGLTLASR
DQVESAQKSGFETCSYGWVGEQFSVIPRIFSNPRCGKNGKGVLIWNAPSSQKFKAYCHNSSDTWVNSCIP
EIVTTFYPVLDTQTPATEFSVSSSAYLASSPDSTTPVSATTRAPPLTSMARKTKKICITEVYTEPITMAT
ETEAFVASGAAFKNEAAGFGGVPTALLVLALLFFGAAAVLAVCYVKRYVKAFPFTTKNQQKEMIETKVVK
EEKADDVNANEESKKTIKNPEEAKSPPKTTVRCLEAEV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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