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Report for CCDS21554.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21554.1 Public Mus musculus 7 Or51t4 23 108 98 CCDS HistoryNCBI Gene:258357Re-query CCDS DB by CCDS ID:21554.1Re-query CCDS DB by GeneID:258357See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21554.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000052997.5 ENSMUSP00000095815.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000052997.5Link to Ensembl Protein Viewer:ENSMUSP00000095815.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000052997Re-query CCDS DB by Protein ID:ENSMUSP00000095815
Original member Current member NCBI NM_146360.2 NP_666472.2 Accepted alive Link to Nucleotide Sequence:NM_146360.2Link to Protein Sequence:NP_666472.2Re-query CCDS DB by Nucleotide ID:NM_146360Re-query CCDS DB by Protein ID:NP_666472Link to BLAST:NP_666472.2

Chromosomal Locations for CCDS 21554.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 102948467 102949507 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1041 nt):
ATGTTTTTCAGAGTGTGTCTTCAAGTCACCATGCTGATCTTCAATAATACCACATCCCCCTCCTCCTCCA
GCTTCCTCCTTACGGCCTTCCCTGGATTAGAACTTGCTCACGTCTGGATCTCCATTCCTGTTTGTGGTCT
CTACACCATTGCACTCTTAGGAAACAGTATTATTTTGTTTGTCATTATCATTGAACGGAGTCTCCACAAG
CCCATGTACTATTTTCTCTCCATGCTGTCTGTTGTTGATCTAGGTCTGACCATCACAACCCTTCCCACAG
TCCTTGGTGTCCTTTGGTTTCATGCCCGGGAGATCAGCATTAAAGTATGCCTCATTCAAATGTTCTTTGT
GCATGGCTTCTCATTCCTGGAGTCTTCAGTGTTGGTGGCCATGGCTTTTGACCGCTACTTGGCCATCTGC
AGCCCTCTGAAGTATGCTACTTTCCTGACAGACATGATGAGCTTTGTGATCGGACTGATCATCTGTATAA
GACAGGTGTTTTTCATGTTTCCTTCAGTTATGGCTGTGAAGAGTGTGTCCTTCCAAGGAGGCCAAGAGCT
TTCCCATCCATTTTGCTTCCATCCAGATATAATCAAATACACATACACCAACCCCTGGATCAGCAGCTTC
TGGGGAATGTTTCTTCAGCTCTACCTGAACGGCACTGACTTATTGTTCATTCTTTTCTCCTACGTCCTGA
TCCTTCGCACTGTTCTGAACATCGTGGCTCCTCAAAAACAGCAGAAAGCTCTTAGCACATGTGTTTGTCA
CATCTGTGCTGTGACCATTTTCTATGTGCCAATGATCACCCTGTCTGTGGCACACCGTCTCTTCAGTTCT
ACTCCCAGGGTGATCTGTAGTATTTTGGGCAATATGTATCTGCTCTTGCCGCCTGTGCTGAATCCTATCA
TTTACAGCTTGAAGACCAAGGTTATTCGCCAAGCCATATTCCAGCTGTTCCGATTCAAGGATGCAAGGGG
CTACAGTATGAGGAGCCTTAGAGGAAGGTGGGCTAGAAGGAGACAATTTTCCAGTACATGA

Translation (346 aa):
MFFRVCLQVTMLIFNNTTSPSSSSFLLTAFPGLELAHVWISIPVCGLYTIALLGNSIILFVIIIERSLHK
PMYYFLSMLSVVDLGLTITTLPTVLGVLWFHAREISIKVCLIQMFFVHGFSFLESSVLVAMAFDRYLAIC
SPLKYATFLTDMMSFVIGLIICIRQVFFMFPSVMAVKSVSFQGGQELSHPFCFHPDIIKYTYTNPWISSF
WGMFLQLYLNGTDLLFILFSYVLILRTVLNIVAPQKQQKALSTCVCHICAVTIFYVPMITLSVAHRLFSS
TPRVICSILGNMYLLLPPVLNPIIYSLKTKVIRQAIFQLFRFKDARGYSMRSLRGRWARRRQFSST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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