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Report for CCDS21514.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21514.1 Public Mus musculus 7 Phox2a 23 108 98 CCDS HistoryNCBI Gene:11859Re-query CCDS DB by CCDS ID:21514.1Re-query CCDS DB by GeneID:11859See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21514.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008090.10 ENSMUSP00000008090.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008090.10Link to Ensembl Protein Viewer:ENSMUSP00000008090.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000008090Re-query CCDS DB by Protein ID:ENSMUSP00000008090
Original member Current member NCBI NM_008887.2 NP_032913.1 Accepted alive Link to Nucleotide Sequence:NM_008887.2Link to Protein Sequence:NP_032913.1Re-query CCDS DB by Nucleotide ID:NM_008887Re-query CCDS DB by Protein ID:NP_032913Link to BLAST:NP_032913.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032913.1 280 Q62066 280 100% 0 0

Chromosomal Locations for CCDS 21514.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 101818498 101818714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101820781 101820968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 101821708 101822145 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (843 nt):
ATGGACTACTCCTACCTCAATTCGTACGATTCGTGCGTGGCGGCCATGGAGGCGTCCGCCTACGGTGACT
TCGGCGCCTGCAGCCAGCCTGGAGGCTTCCAATACAGTCCCCTGCGGCCTGCCTTCCCCGCCGCTGGGCC
ACCTTGCCCCGCGCTCGGCTCCTCCAACTGTGCGCTTGGCGCCCTACGCGACCACCAGCCCGCACCCTAC
TCGGCAGTTCCCTACAAGTTCTTCCCGGAGCCGTCCGGCCTGCATGAGAAGCGCAAGCAGCGGCGCATCC
GCACAACGTTCACGAGTGCTCAGCTCAAGGAGTTGGAGCGCGTCTTCGCCGAGACCCACTACCCCGACAT
TTACACTCGCGAGGAACTGGCGCTCAAGATCGACCTCACTGAGGCTCGCGTGCAGGTCTGGTTCCAGAAC
CGCCGGGCCAAGTTCCGCAAACAGGAGCGCGCGGCCAGCGCCAAAGGCGCGGCGGGAGCGACGGGCGCCA
AAAAGGGCGAGGCGCGTTGCTCGTCGGAGGACGACGACTCCAAGGAGTCCACGTGCAGCCCCACGCCCGA
CAGCACCGCGTCGCTGCCGCCGCCGCCTGCACCCAGCCTGGCCAGCCCGCGTCTGAGCCCCAGCCCTCTG
CCCGCCGCGCTGGGCTCCGGGCCCGGGCCCCAGCCGCTCAAGGGAGCGTTGTGGGCAGGGGTGGCGGGCG
GTGGAGGTGGCGGCCCCGGCACGGGCGCAGCGGAGCTGCTTAAGGCCTGGCAGCCGGCGGAACCCGGGCC
AGGTCCCTTCTCTGGAGTTCTGTCCTCCTTTCACCGGAAGCCCGGCCCCGCCCTGAAGACAAACCTCTTC
TAG

Translation (280 aa):
MDYSYLNSYDSCVAAMEASAYGDFGACSQPGGFQYSPLRPAFPAAGPPCPALGSSNCALGALRDHQPAPY
SAVPYKFFPEPSGLHEKRKQRRIRTTFTSAQLKELERVFAETHYPDIYTREELALKIDLTEARVQVWFQN
RRAKFRKQERAASAKGAAGATGAKKGEARCSSEDDDSKESTCSPTPDSTASLPPPPAPSLASPRLSPSPL
PAALGSGPGPQPLKGALWAGVAGGGGGGPGTGAAELLKAWQPAEPGPGPFSGVLSSFHRKPGPALKTNLF


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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