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Report for CCDS21460.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21460.1 Public Mus musculus 7 Ints4 23 108 98 CCDS HistoryNCBI Gene:101861Re-query CCDS DB by CCDS ID:21460.1Re-query CCDS DB by GeneID:101861See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21460.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000026126.9 ENSMUSP00000026126.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000026126.9Link to Ensembl Protein Viewer:ENSMUSP00000026126.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000026126Re-query CCDS DB by Protein ID:ENSMUSP00000026126
Original member Current member NCBI NM_027256.2 NP_081532.1 Accepted alive Link to Nucleotide Sequence:NM_027256.2Link to Protein Sequence:NP_081532.1Re-query CCDS DB by Nucleotide ID:NM_027256Re-query CCDS DB by Protein ID:NP_081532Link to BLAST:NP_081532.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081532.1 964 Q8CIM8-1 964 100% 0 0

Chromosomal Locations for CCDS 21460.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97481097 97481150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97484917 97485111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97487352 97487469 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97490931 97491037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97495657 97495842 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97499549 97499599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97500970 97501058 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97501728 97501848 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97506064 97506135 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97507716 97507890 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97509591 97509796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97513527 97513669 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97516226 97516341 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97517622 97517755 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97519048 97519205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97526629 97526722 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97529214 97529294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97530300 97530430 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97530752 97530811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97534371 97534530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97535141 97535284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97537900 97538020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97541012 97541190 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2895 nt):
ATGGCGGCGCACCTGAAAAAGCGGGTGTATGAGGAGTTCACTAAAGTGGTTCAGCAGCAGCAGGAGGAAA
TTGCTACCAAGAAGCTCCGATTAACAAAGCCGAGCAAATCTGCCGCTCTCCACATAGATCTGTGTAAAGC
CACCTCCCCAGCAGATGCTTTGCAGTACCTACTCCAGTTTGCCAGAAAGCCTGTAGAAGCAGAGAGTGTG
GAGGGGGTAGTCAGGATTCTCTTGGAACATTATTACAAGGAAAATGATCCATCTGTGAGACTGAAAATTG
CATCACTCTTGGGATTATTATCAAAGACGGCAGGATTCTCTCCAGACTGCATAATGGACGACGCCATTAA
CATACTACAGAATGAAAAGTCTCACCAAGTGCTAGCTCAACTACTGGACACTTTGCTTGCAATTGGCAGT
AAACTACCAGAAAATCAAGCTACCCAAGTGCGATTAGTGGATGTGGCCTGCAAGCACCTGACAGATACTT
CCCATGGTGTAAGAAATAAGTGCTTGCAATTACTTGGCAATCTTGGCTCTTTGGAGAAAAGTGTCACAAA
AGATACTGAAGGCTCAGCTGCCAGAGATGTTCAGAAAATTATCGGGGACCACTTCAGTGACCAAGATCCA
CGGGTCAGAACAGCAGCTATAAAAGCCATGTTGCAGCTCCATGAAAGAGGACTGAAGTTACACCAAACGA
TTTATAATCAGGCCTGTAAATTGCTCTCTGATGACTACGAGCAGGTGCGCAGTGCTGCAGTCCAGCTTAT
CTGGGTTGTCAGCCAGCTCTATCCTGAGAGTATAGTTCCAATACCGTCTTCTAATGAAGAAATCCGTCTA
GTTGATGATGCATTTGGAAAAATTTGCCACATGGTCAGTGATGGCTCCTGGGTGGTTCGTGTTCAAGCTG
CAAAGCTATTGGGCTCGATGGAGCAAGTTAGCTCTCATTTCTTGGAGCAGACTCTTGACAAGAAGCTGAT
GTCAGATCTGAGGAGGAAACGCACTGCACATGAGCGTGCCAAGGAACTTTACAGTTCGGGGGAGTTTTCC
AGTGGCAGGAAATGGGGAGATGATGCTCCCAAGGAAGAAATAGACACGGGGGCCGTGAACCTGATAGAGT
CAGGAGCGTGTGGAGCCTTTGTTCATGGGTTGGAAGATGAGATGTATGAGGTTCGCATTGCTGCTGTGGA
GGCTCTGTGCATGCTAGCCCAGTCTTCGCCCTCTTTTGCTGAAAAGTGCCTTGACTTTCTAGTTGACATG
TTCAATGATGAAATTGAGGAAGTGCGTCTGCAGTCCATACACACCATGAGAAAAATCTCTAACAATATCA
CCCTCCGAGAAGATCAGCTTGACACTGTCCTGGCTGTGTTAGAGGATTCATCCAGGGATATTAGAGAGGC
TCTTCATGAACTCTTATGCTGCACTAATGTCTCAACCAAAGAAGGGATTCATCTTGCACTGGTGGAGCTT
CTAAAAAACCTAACCAAGTACCCTACTGACAGGGACTCCATATGGAAGTGCTTGAAGTTTCTGGGCAGCC
GGCATCCGACCCTCGTGCTTCCTCTGGTGCCAGAGCTCTTGAGCACGCACCCATTTTTTGATACTGCTGA
ACCAGACATGGACGATCCAGCTTACATTGCAGTTTTAGTTCTTATCTTCAATGCTGCTAAGACCTGTCCT
ACAATGCCAGCACTCTTCTCAGACCACACCCTCAGGCACTATGCCTACCTCCGAGACAGCCTTTCTCATC
TTGTTCCTGCCTTGAGGTTACCAGGGAGAAAACTGGTGTCCTCCACTGTCCCCTCTAACATCACCCCTCA
TGAAGATCCTTCCCAGCAGTTCCTGCAGCAGAGCCTTGAAAGGGTGTATAGTGTTCAGCACCTAGATCCT
CAGGGGGCCCAAGAGCTGCTGGAATTCACCATCAGAGATCTGCAAAGACTTGGAGAGCTTCAGTCTGAAT
TGGCAGGAGTAGCTGACTTCTCTGCCACCTATCTTCAGTGTCAACTGCTCCTCATTAAGGCCTTGCAGGA
AAAGCTGTGGAATGTGGCTGCCCCCTTGTATCTAAAGCAGAGTGATTTGGCCTCAGCAGCAGCAAAACAG
ATCATGGAGGAAACCTACAAAATGGAGTTTATGTACAGTGGTGTGGAAAACAAGCAGGTTGTGATCATAC
AGCACATGAGGCTTCAGGCCAAAGCTCTGCAACTCATAGTAACTGCACGAACTACTCGAGGAGTAGACCC
CTTATTTGGAATGTGTGAAAAATTTTTACAGGAAGTGGATTTTTTTCAGAGGTGTTTCATTGCGGATTTG
CCCCACCTTCAAGATAGCTTTGTGGACAAACTCCTTGATCTTATGCCCCGACTCATGGCATCTAAACCTG
TTGAAGTGATCAAAATTCTGCAGACAATGCTGCGGCAGAGCACCTTCTTACATCTTCCGCTTCCAGAGCA
GATACACAAAGCCTCAGCCACCATTATTGAGCCGGCAGGAGAGTCAGACAATCCTTTGCGGTTTACATCT
GGGTTGGTGGTAGCCTTGGATGTGGATGCAACCCTGGAACATGTGCAAGACCCCCAGAACACTGTCAAGG
TTCAGGTCTTATATCCAGATGGCCAGGCTCAGATGATCCACCCCAAGCCAGCAGATTTCCGGAATCCTGG
CCCAGGACGGCACCGTCTCCTCACTCAGGTGTACCTCTCCCATACTGCCTGGACAGAACCATGCCAAGTG
GAAGTGAGGCTATTGCTGGCCTACAACTCCGGTGCACGAATTCCAAAATCTCCATGGCTGGAGGGTAGTG
AGATGTCACCACAGGTGGAAACCAGCATCGAGGGCACCATCCCCTTCAGTAAGCCTGTGAAAGTCTACAT
AATGCCCAAGCCTGCAAGACGCTGA

Translation (964 aa):
MAAHLKKRVYEEFTKVVQQQQEEIATKKLRLTKPSKSAALHIDLCKATSPADALQYLLQFARKPVEAESV
EGVVRILLEHYYKENDPSVRLKIASLLGLLSKTAGFSPDCIMDDAINILQNEKSHQVLAQLLDTLLAIGS
KLPENQATQVRLVDVACKHLTDTSHGVRNKCLQLLGNLGSLEKSVTKDTEGSAARDVQKIIGDHFSDQDP
RVRTAAIKAMLQLHERGLKLHQTIYNQACKLLSDDYEQVRSAAVQLIWVVSQLYPESIVPIPSSNEEIRL
VDDAFGKICHMVSDGSWVVRVQAAKLLGSMEQVSSHFLEQTLDKKLMSDLRRKRTAHERAKELYSSGEFS
SGRKWGDDAPKEEIDTGAVNLIESGACGAFVHGLEDEMYEVRIAAVEALCMLAQSSPSFAEKCLDFLVDM
FNDEIEEVRLQSIHTMRKISNNITLREDQLDTVLAVLEDSSRDIREALHELLCCTNVSTKEGIHLALVEL
LKNLTKYPTDRDSIWKCLKFLGSRHPTLVLPLVPELLSTHPFFDTAEPDMDDPAYIAVLVLIFNAAKTCP
TMPALFSDHTLRHYAYLRDSLSHLVPALRLPGRKLVSSTVPSNITPHEDPSQQFLQQSLERVYSVQHLDP
QGAQELLEFTIRDLQRLGELQSELAGVADFSATYLQCQLLLIKALQEKLWNVAAPLYLKQSDLASAAAKQ
IMEETYKMEFMYSGVENKQVVIIQHMRLQAKALQLIVTARTTRGVDPLFGMCEKFLQEVDFFQRCFIADL
PHLQDSFVDKLLDLMPRLMASKPVEVIKILQTMLRQSTFLHLPLPEQIHKASATIIEPAGESDNPLRFTS
GLVVALDVDATLEHVQDPQNTVKVQVLYPDGQAQMIHPKPADFRNPGPGRHRLLTQVYLSHTAWTEPCQV
EVRLLLAYNSGARIPKSPWLEGSEMSPQVETSIEGTIPFSKPVKVYIMPKPARR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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