NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS21450.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21450.1 Public Mus musculus 7 Rab30 23 108 98 CCDS HistoryNCBI Gene:75985Re-query CCDS DB by CCDS ID:21450.1Re-query CCDS DB by GeneID:75985See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21450.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032879.14 ENSMUSP00000032879.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032879.14Link to Ensembl Protein Viewer:ENSMUSP00000032879.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032879Re-query CCDS DB by Protein ID:ENSMUSP00000032879
Original member Current member EBI ENSMUST00000107180.7 ENSMUSP00000102798.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107180.7Link to Ensembl Protein Viewer:ENSMUSP00000102798.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000107180Re-query CCDS DB by Protein ID:ENSMUSP00000102798
Original member Current member NCBI NM_029494.2 NP_083770.2 Accepted alive Link to Nucleotide Sequence:NM_029494.2Link to Protein Sequence:NP_083770.2Re-query CCDS DB by Nucleotide ID:NM_029494Re-query CCDS DB by Protein ID:NP_083770Link to BLAST:NP_083770.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_083770.2 203 Q923S9 203 100% 0 0

Chromosomal Locations for CCDS 21450.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 92819991 92820083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92823798 92823881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92829526 92829709 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 92835689 92835939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGAGTATGGAAGATTATGATTTCCTGTTCAAAATTGTTTTAATTGGCAACGCTGGAGTGGGAAAGACGT
GCCTAGTCCGAAGATTCACTCAGGGTCTTTTCCCCCCAGGTCAAGGAGCCACAATTGGAGTTGATTTTAT
GATTAAGACAGTGGAGATTAATGGTGAAAAAGTGAAGTTACAGATCTGGGACACCGCAGGTCAAGAGAGA
TTTCGCTCCATCACTCAAAGTTACTATCGAAGCGCCAATGCCTTGATCCTTACCTATGACATCACCTGTG
AGGAATCCTTCCGCTGCCTTCCTGAGTGGTTGCGGGAGATAGAACAGTATGCTAGCAATAAAGTCATCAC
TGTGTTAGTAGGCAACAAGATTGACCTGGCTGAAAGGCGAGAGGTCTCCCAGCAGAGAGCAGAAGAGTTC
TCAGAGGCTCAGGACATGTATTACCTGGAGACTTCAGCCAAGGAATCCGACAATGTGGAGAAACTCTTCC
TTGACTTAGCATGCCGACTCATCAGCGAAGCAAGACAGAACACACTGGTGAACAATGTATCGTCACCCTT
ACCCGGAGAGGGGAAAAGCATCAGCTATTTGACTTGTTGTAATTTCAACTAA

Translation (203 aa):
MSMEDYDFLFKIVLIGNAGVGKTCLVRRFTQGLFPPGQGATIGVDFMIKTVEINGEKVKLQIWDTAGQER
FRSITQSYYRSANALILTYDITCEESFRCLPEWLREIEQYASNKVITVLVGNKIDLAERREVSQQRAEEF
SEAQDMYYLETSAKESDNVEKLFLDLACRLISEARQNTLVNNVSSPLPGEGKSISYLTCCNFN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH