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Report for CCDS21411.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21411.1 Public Mus musculus 7 Stard5 23 108 98 CCDS HistoryNCBI Gene:170460Re-query CCDS DB by CCDS ID:21411.1Re-query CCDS DB by GeneID:170460See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21411.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075418.14 ENSMUSP00000074872.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075418.14Link to Ensembl Protein Viewer:ENSMUSP00000074872.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000075418Re-query CCDS DB by Protein ID:ENSMUSP00000074872
Original member Current member NCBI NM_023377.4 NP_075866.2 Accepted alive Link to Nucleotide Sequence:NM_023377.4Link to Protein Sequence:NP_075866.2Re-query CCDS DB by Nucleotide ID:NM_023377Re-query CCDS DB by Protein ID:NP_075866Link to BLAST:NP_075866.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_075866.2 213 Q9EPQ7 213 100% 0 0

Chromosomal Locations for CCDS 21411.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 83632041 83632139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83632736 83632785 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83633130 83633262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83636751 83636868 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83637604 83637697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 83640422 83640569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (642 nt):
ATGGACCCGTCCTGGGCCACGCAAGAGAGTGAGGCGGTGGCAGAGAAGGTGCTCCGGTACCGGCGGGACG
CGTCGGGCTGGAAGAAGTGTCGGGAAGGCAATGGAGTTTCAATTTCCTGGAGGCCATCTGAGGAGTTTCC
AGGGAATCTGTACCGAGGAGAAGGGATTCTGTGTGGGACACCAGAAGAGGTGTGGGATTGCATAAAGCCA
GTTGCTTCGGGCCTCCGGGAGAAGTGGGATGATAATGTGAGCAGCTTTGAAATTGTCCAGAGCATCACGG
ATATGCTGTGTGTGAGCAGAACCTCCACGCCCTCAGCTGCCATGAAGCTTATTTCTCCCAGGGACTTTGT
GGACTTGGTGCTGGTGAAGAAGTATGAGGATGGCACCATCAGCTCCAATGCTACCCATGTGGAACATCCA
TTGTGTCCCCCAAAGCCCGGTTTTGTGAGAGGATTTAACCATCCATGCGGGTGCTTCTGTGAACCACTGC
CAGGGGATCCCAACAAAACCAACCTGGTCACATTCTTTCAGACAGACCTGAGTGGCTACCTCCCTCAGAG
TGTGGTGGACTCCTTCTTCCCTCGAAGCATGGCTGAGTTCTACCCCAACCTTCAGAAGGCAGTGAGGAAG
TTCCATCACTGA

Translation (213 aa):
MDPSWATQESEAVAEKVLRYRRDASGWKKCREGNGVSISWRPSEEFPGNLYRGEGILCGTPEEVWDCIKP
VASGLREKWDDNVSSFEIVQSITDMLCVSRTSTPSAAMKLISPRDFVDLVLVKKYEDGTISSNATHVEHP
LCPPKPGFVRGFNHPCGCFCEPLPGDPNKTNLVTFFQTDLSGYLPQSVVDSFFPRSMAEFYPNLQKAVRK
FHH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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