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Report for CCDS21385.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21385.1 Public Mus musculus 7 Plin1 23 108 98 CCDS HistoryNCBI Gene:103968Re-query CCDS DB by CCDS ID:21385.1Re-query CCDS DB by GeneID:103968See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21385.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032762.13 ENSMUSP00000032762.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032762.13Link to Ensembl Protein Viewer:ENSMUSP00000032762.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000032762Re-query CCDS DB by Protein ID:ENSMUSP00000032762
Original member Current member EBI ENSMUST00000178257.2 ENSMUSP00000136996.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000178257.2Link to Ensembl Protein Viewer:ENSMUSP00000136996.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000178257Re-query CCDS DB by Protein ID:ENSMUSP00000136996
Original member Current member EBI ENSMUST00000205915.1 ENSMUSP00000146028.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000205915.1Link to Ensembl Protein Viewer:ENSMUSP00000146028.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000205915Re-query CCDS DB by Protein ID:ENSMUSP00000146028
Original member Current member NCBI NM_001113471.1 NP_001106942.1 Accepted alive Link to Nucleotide Sequence:NM_001113471.1Link to Protein Sequence:NP_001106942.1Re-query CCDS DB by Nucleotide ID:NM_001113471Re-query CCDS DB by Protein ID:NP_001106942Link to BLAST:NP_001106942.1
Original member Current member NCBI NM_175640.2 NP_783571.2 Accepted alive Link to Nucleotide Sequence:NM_175640.2Link to Protein Sequence:NP_783571.2Re-query CCDS DB by Nucleotide ID:NM_175640Re-query CCDS DB by Protein ID:NP_783571Link to BLAST:NP_783571.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001106942.1 517 Q8CGN5-1 517 100% 0 0
NP_783571.2 517 Q8CGN5-1 517 100% 0 0

Chromosomal Locations for CCDS 21385.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 79721421 79721759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79722608 79722853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79723251 79723451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79725632 79725804 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79726392 79726653 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79727970 79728052 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79729851 79730055 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 79732097 79732141 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1554 nt):
ATGTCAATGAACAAGGGCCCAACCCTGCTGGATGGAGACCTCCCTGAGCAGGAGAACGTGCTCCAGAGAG
TTCTGCAGCTGCCTGTGGTGAGCGGGACCTGTGAGTGCTTCCAGAAGACCTACAACAGCACCAAAGAAGC
CCACCCCCTGGTGGCCTCTGTGTGCAATGCCTATGAGAAGGGTGTACAGGGTGCCAGCAACCTGGCTGCC
TGGAGCATGGAGCCGGTGGTCCGTCGGCTGTCCACCCAGTTCACAGCTGCCAATGAGTTGGCCTGCAGAG
GCCTGGACCACCTGGAGGAAAAGATCCCGGCTCTTCAATACCCTCCAGAAAAGATCGCCTCTGAACTGAA
GGGCACCATCTCTACCCGCCTTCGAAGCGCCAGGAACAGCATCAGTGTGCCCATTGCAAGCACCTCTGAC
AAGGTTCTGGGGGCCACTCTGGCCGGCTGCGAGCTTGCCTTGGGGATGGCCAAAGAGACAGCAGAATATG
CCGCCAACACCCGGGTTGGCCGACTGGCCTCTGGAGGGGCTGATCTGGCTCTGGGAAGCATCGAGAAGGT
GGTAGAGTTCCTCCTGCCACCAGACAAGGAGTCAGCCCCTTCTTCCGGACGGCAGAGGACCCAGAAGGCT
CCCAAGGCCAAACCAAGCCTTGTGAGGAGGGTCAGCACCCTGGCCAACACTCTTTCTCGACACACCATGC
AAACCACAGCATGGGCCCTGAAGCAGGGCCACTCTCTGGCCATGTGGATCCCGGGTGTGGCACCCCTGAG
CAGCCTGGCCCAGTGGGGCGCATCGGCAGCCATGCAGGTGGTGTCCCGGCGGCAGAGTGAGGTGCGGGTG
CCCTGGCTGCACAACCTGGCAGCCTCTCAGGATGAGAGCCATGACGACCAGACAGACACAGAGGGAGAGG
AGACAGACGACGAGGAGGAGGAAGAAGAGTCCGAGGCTGAGGAGAACGTGCTCAGAGAGGTTACAGCCCT
GCCCAACCCGAGAGGCCTCCTGGGTGGTGTGGTACACACCGTGCAGAACACTCTCCGGAACACCATCTCC
GCAGTGACCTGGGCACCTGCGGCTGTGCTGGGCACGGTGGGAAGGATCCTGCACCTCACACCAGCCCAGG
CTGTCTCCTCTACCAAAGGGAGGGCCATGTCCCTATCCGATGCCCTGAAGGGTGTTACGGATAACGTGGT
AGACACTGTGGTACACTATGTGCCGCTTCCCAGGCTGTCCCTGATGGAGCCCGAGAGCGAATTCCGAGAC
ATCGATAACCCTTCAGCAGAGGCGGAGCGCAAAGGGTCCGGGGCGCGGCCCGCCAGCCCGGAGTCCACCC
CGCGCCCGGGCCAGCCCCGCGGCAGCTTGCGCAGCGTGCGGGGTCTCAGCGCGCCCTCCTGCCCCGGCCT
GGACGACAAAACCGAGGCGTCAGCGCGTCCCGGCTTCCTGGCTATGCCCAGAGAGAAGCCTGCGCGCAGA
GTCAGCGACAGCTTCTTCCGGCCCAGCGTCATGGAGCCCATCCTGGGCCGCGCGCAGTACAGCCAGCTGC
GCAAGAAGAGCTGA

Translation (517 aa):
MSMNKGPTLLDGDLPEQENVLQRVLQLPVVSGTCECFQKTYNSTKEAHPLVASVCNAYEKGVQGASNLAA
WSMEPVVRRLSTQFTAANELACRGLDHLEEKIPALQYPPEKIASELKGTISTRLRSARNSISVPIASTSD
KVLGATLAGCELALGMAKETAEYAANTRVGRLASGGADLALGSIEKVVEFLLPPDKESAPSSGRQRTQKA
PKAKPSLVRRVSTLANTLSRHTMQTTAWALKQGHSLAMWIPGVAPLSSLAQWGASAAMQVVSRRQSEVRV
PWLHNLAASQDESHDDQTDTEGEETDDEEEEEESEAEENVLREVTALPNPRGLLGGVVHTVQNTLRNTIS
AVTWAPAAVLGTVGRILHLTPAQAVSSTKGRAMSLSDALKGVTDNVVDTVVHYVPLPRLSLMEPESEFRD
IDNPSAEAERKGSGARPASPESTPRPGQPRGSLRSVRGLSAPSCPGLDDKTEASARPGFLAMPREKPARR
VSDSFFRPSVMEPILGRAQYSQLRKKS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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