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Report for CCDS21315.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21315.1 Public Mus musculus 7 Cyfip1 23 108 98 CCDS HistoryNCBI Gene:20430Re-query CCDS DB by CCDS ID:21315.1Re-query CCDS DB by GeneID:20430See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21315.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032629.15 ENSMUSP00000032629.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032629.15Link to Ensembl Protein Viewer:ENSMUSP00000032629.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000032629Re-query CCDS DB by Protein ID:ENSMUSP00000032629
Original member Current member EBI ENSMUST00000163845.3 ENSMUSP00000127717.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000163845.3Link to Ensembl Protein Viewer:ENSMUSP00000127717.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000163845Re-query CCDS DB by Protein ID:ENSMUSP00000127717
Original member Current member NCBI NM_001164661.1 NP_001158133.1 Accepted alive Link to Nucleotide Sequence:NM_001164661.1Link to Protein Sequence:NP_001158133.1Re-query CCDS DB by Nucleotide ID:NM_001164661Re-query CCDS DB by Protein ID:NP_001158133Link to BLAST:NP_001158133.1
Original member Current member NCBI NM_011370.3 NP_035500.2 Accepted alive Link to Nucleotide Sequence:NM_011370.3Link to Protein Sequence:NP_035500.2Re-query CCDS DB by Nucleotide ID:NM_011370Re-query CCDS DB by Protein ID:NP_035500Link to BLAST:NP_035500.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001158133.1 1253 Q7TMB8-1 1253 100% 0 0
NP_035500.2 1253 Q7TMB8-1 1253 100% 0 0

Chromosomal Locations for CCDS 21315.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 55871860 55871976 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55872067 55872156 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55873446 55873523 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55873657 55873758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55874907 55875088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55877691 55877787 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55877879 55878007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55879077 55879181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55886726 55886817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55887822 55887939 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55891989 55892111 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55893120 55893245 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55894981 55895147 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55896668 55896815 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55898238 55898391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55899915 55900071 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55900504 55900600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55904189 55904265 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55904374 55904482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55907319 55907438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55908365 55908564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55913440 55913527 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55919420 55919563 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55922747 55922837 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55923875 55924005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55924374 55924446 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55925112 55925206 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55926288 55926526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55928187 55928334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 55929998 55930162 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3762 nt):
ATGGCTGCCCAAGTGACACTAGAGGACGCACTGTCCAATGTGGACCTCCTGGAGGAGCTGCCTCTGCCTG
ACCAGCAGCCCTGCATCGAGCCCCCACCGTCCTCGCTGCTCTATCAGCCAAATTTCAACACCAACTTTGA
AGACAGAAATGCATTTGTCACTGGCATTGCAAGATACATCGAACAAGCAACTGTCCACTCTAGCATGAAC
GAGATGCTAGAGGAAGGCCAAGAGTATGCTGTCATGCTGTACACCTGGAGGAGCTGCTCCCGGGCCATCC
CTCAGGTGAAGTGCAACGAGCAGCCGAATAGAGTTGAAATTTATGAGAAAACCGTGGAAGTCCTTGAACC
CGAGGTCACAAAACTGATGAATTTTATGTACTTTCAGAGAAATGCCATCGAGCGGTTCTGTGGGGAAGTG
AGACGCCTGTGTCATGCTGAGAGGAGAAAGGACTTTGTTTCTGAAGCCTACTTGATCACCCTGGGCAAAT
TTATCAACATGTTTGCTGTGTTGGATGAGCTGAAGAACATGAAGTGCAGTGTGAAGAATGACCACTCTGC
ATATAAGAGGGCTGCTCAGTTTTTACGTAAAATGGCAGATCCACAATCCATCCAGGAGTCACAGAATCTG
TCCATGTTCCTGGCCAACCACAACAAGATTACACAATCTCTGCAGCAGCAGCTTGAGGTCATTTCTGGCT
ATGAAGAGCTCCTGGCAGACATCGTGAATCTGTGTGTGGATTACTATGAGAACAGGATGTACTTGACACC
CAGCGAAAAACACATGCTTCTCAAAGTCATGGGATTTGGCCTGTACCTGATGGATGGGAGTGTGAGTAAC
ATCTACAAACTAGATGCCAAGAAAAGAATAAATTTATCCAAAATCGACAAGTATTTCAAGCAGCTGCAGG
TGGTTCCACTCTTTGGAGATATGCAAATAGAACTGGCAAGATACATCAAGACCAGCGCACACTATGAGGA
GAATAAGTCCCGGTGGACCTGCGCGTCCTCCAGCAGCAGCCCGCAGTACAACATCTGTGAGCAGATGATC
CAGATCCGTGAGGACCATATGCGTTTCATCTCCGAGCTGGCACGCTACAGCAATAGCGAGGTAGTCACAG
GGTCTGGCCGGCAGGAAGCCCAGAAGACAGATGCTGAGTACCGGAAGCTCTTCGATCTGGCTCTGCAGGG
CCTGCAGCTTCTGTCGCAGTGGAGCGCTCACGTGATGGAAGTGTATTCCTGGAAACTTGTACATCCAACA
GACAAGTACTCCAACAAGGACTGCCCCGACAACGCTGAGGAGTACGAGCGAGCCACACGCTACAACTACA
CCACTGAGGAGAAGTTTGCCCTGGTGGAGGTGATTGCCATGATCAAAGGCCTGCAGGTGCTGATGGGCAG
GATGGAGAGTGTGTTCAATCACGCCATCAGACACACGGTTTACGCTGCGCTTCAGGACTTCTCCCAGGTG
ACCCTCAGGGAACCACTGCGACAGGCCATCAAGAAGAAAAAGAACGTAATCCAGAGTGTCCTACAGGCCA
TCAGGAAGACTGTGTGTGACTGGGAGACTGGGCATGAGCCCTTTAACGACCCAGCTCTGCGGGGAGAGAA
GGACCCTAAGAGTGGCTTTGACATCAAGGTGCCACGCCGTGCTGTGGGACCCTCCAGCACGCAGCTTTAC
ATGGTGAGAACTATGCTAGAGTCCCTCATTGCAGACAAAAGTGGTTCCAAGAAAACCTTGAGAAGTAGCC
TTGAGGGGCCCACCATATTGGACATAGAAAAATTTCATCGAGAATCATTCTTCTACACTCACTTGATAAA
TTTCAGTGAAACACTGCAGCAGTGCTGTGACCTTTCCCAGCTGTGGTTCCGAGAGTTCTTCCTGGAGCTG
ACCATGGGCAGGAGGATCCAGTTCCCCATTGAGATGTCTATGCCCTGGATTCTGACTGACCACATCCTAG
AGACCAAGGAGGCATCAATGATGGAGTACGTCCTCTACTCCTTGGACCTGTACAACGACAGTGCCCACTA
TGCGCTCACCAAGTTCAACAAGCAGTTTCTCTATGATGAGATTGAGGCAGAGGTGAATCTGTGTTTTGAC
CAATTTGTTTATAAACTAGCAGACCAGATATTTGCATATTACAAGGTTATGGCAGGAAGTTTGCTTCTTG
ACAAAAGGTTACGGTCAGAATGCAAAAATCAGGGAGCCACGATCCACCTCCCCCCATCTAACCGCTATGA
GACGCTGTTGAAGCAAAGGCACGTGCAGCTGCTCGGGAGATCCATTGATCTCAACCGTCTGATTACACAG
CGCGTTTCAGCAGCCATGTACAAATCTCTAGAACTGGCAATTGGACGGTTTGAAAGTGAAGATTTAACAT
CAGTAGTCGAGCTAGATGGACTCTTAGAAATCAACCGTATGACACACAAGCTGTTGAGCAGGTACCTCAC
ACTGGACAGCTTTGATGCCATGTTCCGGGAAGCCAACCACAACGTGTCTGCACCTTATGGAAGAATTACC
CTCCACGTCTTCTGGGAGCTAAACTATGACTTCTTGCCCAACTACTGCTATAATGGCTCTACCAACCGGT
TTGTTCGGACAGTATTACCATTTTCTCAGGAATTTCAAAGAGACAAACAGCCTAACGCACAGCCCCAGTA
TTTGCATGGATCCAAGGCTTTGAACCTAGCCTACTCAAGCATTTATGGCAGCTACCGGAACTTTGTGGGG
CCTCCGCACTTCCAAGTCATCTGCCGGCTACTTGGCTACCAGGGCATTGCAGTAGTCATGGAAGAGCTGC
TGAAGGTTGTCAAGAGCCTGCTGCAAGGCACAATCCTGCAGTACGTGAAAACTCTGATGGAAGTGATGCC
CAAGATCTGCCGGCTTCCGCGACATGAGTACGGCTCTCCTGGCATCCTGGAGTTCTTCCACCACCAGCTG
AAGGACATTGTGGAGTATGCAGAGCTGAAAACCGTATGCTTCCAGAACCTGCGGGAGGTGGGCAATGCTG
TTCTCTTCTGCCTGCTTATTGAGCAAAGCCTGTCTTTAGAAGAAGTCTGTGACCTGTTGCATGCAGCTCC
TTTCCAGAATATCTTACCTCGAATCCATGTAAAAGAGGGGGAGAGAGTTGATGCCAAAATGAAAAGACTA
GAATCCAAGTATGCCCCACTGCACCTTGTCCCACTGATTGAAAGGCTGGGGACCCCACAGCAAATTGCAA
TTGCAAGAGAGGGGGACTTGCTAACCAAGGAGCGTCTCTGTTGTGGTCTGTCCATGTTTGAAGTCATCCT
GACACGGATCCGGACCTTTCTGGATGATCCCATCTGGCGTGGGCCCCTACCCAGCAATGGTGTCATGCAC
GTGGATGAGTGTGTGGAGTTTCACAGACTATGGAGTGCCATGCAGTTTGTTTACTGCATTCCTGTAGGGA
CACACGAGTTTACAGTGGAGCAGTGTTTTGGAGATGGGCTCCACTGGGCTGGCTGCATGATCATTGTACT
TCTTGGACAGCAGCGGCGCTTTGCTGTGTTGGATTTCTGCTATCATCTTCTCAAAGTTCAGAAACATGAT
GGCAAAGATGAGATCATCAAAAATGTGCCATTGAAGAAGATGGTGGAGAGGATCCGCAAGTTCCAGATTC
TCAACGATGAAATCATCACTATCCTGGACAAGTACTTGAAATCTGGTGATGGCGAGAGCACACCTGTGGA
GCATGTACGCTGCTTCCAGCCACCCATCCACCAGTCCCTAGCCAGTAGCTGA

Translation (1253 aa):
MAAQVTLEDALSNVDLLEELPLPDQQPCIEPPPSSLLYQPNFNTNFEDRNAFVTGIARYIEQATVHSSMN
EMLEEGQEYAVMLYTWRSCSRAIPQVKCNEQPNRVEIYEKTVEVLEPEVTKLMNFMYFQRNAIERFCGEV
RRLCHAERRKDFVSEAYLITLGKFINMFAVLDELKNMKCSVKNDHSAYKRAAQFLRKMADPQSIQESQNL
SMFLANHNKITQSLQQQLEVISGYEELLADIVNLCVDYYENRMYLTPSEKHMLLKVMGFGLYLMDGSVSN
IYKLDAKKRINLSKIDKYFKQLQVVPLFGDMQIELARYIKTSAHYEENKSRWTCASSSSSPQYNICEQMI
QIREDHMRFISELARYSNSEVVTGSGRQEAQKTDAEYRKLFDLALQGLQLLSQWSAHVMEVYSWKLVHPT
DKYSNKDCPDNAEEYERATRYNYTTEEKFALVEVIAMIKGLQVLMGRMESVFNHAIRHTVYAALQDFSQV
TLREPLRQAIKKKKNVIQSVLQAIRKTVCDWETGHEPFNDPALRGEKDPKSGFDIKVPRRAVGPSSTQLY
MVRTMLESLIADKSGSKKTLRSSLEGPTILDIEKFHRESFFYTHLINFSETLQQCCDLSQLWFREFFLEL
TMGRRIQFPIEMSMPWILTDHILETKEASMMEYVLYSLDLYNDSAHYALTKFNKQFLYDEIEAEVNLCFD
QFVYKLADQIFAYYKVMAGSLLLDKRLRSECKNQGATIHLPPSNRYETLLKQRHVQLLGRSIDLNRLITQ
RVSAAMYKSLELAIGRFESEDLTSVVELDGLLEINRMTHKLLSRYLTLDSFDAMFREANHNVSAPYGRIT
LHVFWELNYDFLPNYCYNGSTNRFVRTVLPFSQEFQRDKQPNAQPQYLHGSKALNLAYSSIYGSYRNFVG
PPHFQVICRLLGYQGIAVVMEELLKVVKSLLQGTILQYVKTLMEVMPKICRLPRHEYGSPGILEFFHHQL
KDIVEYAELKTVCFQNLREVGNAVLFCLLIEQSLSLEEVCDLLHAAPFQNILPRIHVKEGERVDAKMKRL
ESKYAPLHLVPLIERLGTPQQIAIAREGDLLTKERLCCGLSMFEVILTRIRTFLDDPIWRGPLPSNGVMH
VDECVEFHRLWSAMQFVYCIPVGTHEFTVEQCFGDGLHWAGCMIIVLLGQQRRFAVLDFCYHLLKVQKHD
GKDEIIKNVPLKKMVERIRKFQILNDEIITILDKYLKSGDGESTPVEHVRCFQPPIHQSLASS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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