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Report for CCDS21266.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21266.2 Public Mus musculus 7 Grwd1 23 108 98 CCDS HistoryNCBI Gene:101612Re-query CCDS DB by CCDS ID:21266.2Re-query CCDS DB by GeneID:101612See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21266.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data or publications and to represent an alternate exon or splice site that is more supported by the available transcript and protein data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21266.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000107723.8 ENSMUSP00000103351.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000107723.8Link to Ensembl Protein Viewer:ENSMUSP00000103351.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000107723Re-query CCDS DB by Protein ID:ENSMUSP00000103351
Original member Current member EBI ENSMUST00000131384.2 ENSMUSP00000116252.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000131384.2Link to Ensembl Protein Viewer:ENSMUSP00000116252.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000131384Re-query CCDS DB by Protein ID:ENSMUSP00000116252
Original member Current member NCBI NM_153419.2 NP_700468.2 Accepted alive Link to Nucleotide Sequence:NM_153419.2Link to Protein Sequence:NP_700468.2Re-query CCDS DB by Nucleotide ID:NM_153419Re-query CCDS DB by Protein ID:NP_700468Link to BLAST:NP_700468.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_700468.2 446 Q810D6 446 100% 0 0

Chromosomal Locations for CCDS 21266.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45825776 45826093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45827141 45827338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45827526 45827668 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45827780 45827993 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45829982 45830144 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45830292 45830409 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45830595 45830781 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1341 nt):
ATGGCGGCGCGCAAGGGCCGGAGTCGCACGTGTGAAACCGGAGAACCCATGGAGGCTGAAACCTGCGACC
CAGGAACCGAAGGCCCATCCCAGGTCTACCTGCCCGGCAGAGGGCCGCCACTGAGCGAGGGAGAGGAGCT
GGTAATGGATGAAGAGGCCTACGTGCTGTACCATCGTGCGCAAACTGGCGCCCCTTGTCTCAGCTTTGAC
ATAGTTCGAGATCACTTGGGCGACAACCGGACAGAGCTCCCTCTCAGTCTTTACCTGTGTGCGGGAACCC
AGGCGGAGAGCGCCCAGAGCAATAGACTGATGATGCTTCGGATGCACAATCTCCATGGCACCAGGCCGTC
ACCCTCAGAGGGCAGTGATGACGATGAGGAAGATGAAGATGAAGAGGATGAGGAGGAGCAGAAACCTCAG
CTGGAACTGGCCATGGTTCCTCACTACGGTGGCATCAACCGAGTTCGGGTATCTTGGCTGGGGGAGGAAC
CTGTGGCTGGAGTATGGTCAGAGAAGGGCCAAGTGGAGGTGTTCGCACTGCGGCGGCTCCTGCAGGTGGT
GGATGACCCCCAGGCCCTGGCCATCTTCCTCCGAGATGAGCAGGCCCGAATAAAACCCATCTTCTCCTTT
GCTGGCCACATGGGAGAGGGCTTTGCTCTTGACTGGTCCCCTCGGGTGCCCGGCCGCTTGCTGACTGGTG
ACTGTCAGAAGAACGTCCACCTCTGGACACCCACGGAGGGTGGTTCCTGGAATGTGGACCAGAGGCCGTT
TGTGGGCCACACACGGTCTGTGGAGGATCTGCAGTGGTCACCAACTGAGGACACGGTGTTTGCCTCCTGC
TCTGCTGATGCCTCTATTCGCATCTGGGACATCCGAGCAGCCCCAGGCAAGGCCTGCATGCTCACCACAG
CCACTGCCCATGATGGAGATGTTAATGTCATCAGCTGGAGCCGCAGGGAGCCCTTCCTGCTCAGCGGTGG
GGATGATGGTGCCCTCAAAGTCTGGGACCTGCGACAGTTTAAGTCTGGCTCCCCTGTGGCCACCTTCAAG
CAACATATGGCCCCCGTGACCTCTGTTGAATGGCACCCTCAGGACAGTGGGGTCTTCGCAGCCTCAGGTG
CTGACAACCAGATCACACAATGGGACCTGGCAGTTGAACGGGACCCAGAGTCGGGGGAGACAGAGACAGA
CCCTGGGCTGGCGGCACTCCCCCAGCAGTTGCTGTTCGTGCACCAAGGTGAGACTGACCTGAAGGAGCTA
CACTGGCACCCACAGTGCCCGGGGGTCCTGATCAGCACCGCCCTGTCAGGCTTCACCGTCTTCCGCACCA
TCAGTGTTTGA

Translation (446 aa):
MAARKGRSRTCETGEPMEAETCDPGTEGPSQVYLPGRGPPLSEGEELVMDEEAYVLYHRAQTGAPCLSFD
IVRDHLGDNRTELPLSLYLCAGTQAESAQSNRLMMLRMHNLHGTRPSPSEGSDDDEEDEDEEDEEEQKPQ
LELAMVPHYGGINRVRVSWLGEEPVAGVWSEKGQVEVFALRRLLQVVDDPQALAIFLRDEQARIKPIFSF
AGHMGEGFALDWSPRVPGRLLTGDCQKNVHLWTPTEGGSWNVDQRPFVGHTRSVEDLQWSPTEDTVFASC
SADASIRIWDIRAAPGKACMLTTATAHDGDVNVISWSRREPFLLSGGDDGALKVWDLRQFKSGSPVATFK
QHMAPVTSVEWHPQDSGVFAASGADNQITQWDLAVERDPESGETETDPGLAALPQQLLFVHQGETDLKEL
HWHPQCPGVLISTALSGFTVFRTISV


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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