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Report for CCDS21230.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21230.1 Public Mus musculus 7 Rpl13a 23 108 98 CCDS HistoryNCBI Gene:22121Re-query CCDS DB by CCDS ID:21230.1Re-query CCDS DB by GeneID:22121See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21230.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000150350.8 ENSMUSP00000115722.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000150350.8Link to Ensembl Protein Viewer:ENSMUSP00000115722.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000150350Re-query CCDS DB by Protein ID:ENSMUSP00000115722
Original member Current member NCBI NM_009438.5 NP_033464.2 Accepted alive Link to Nucleotide Sequence:NM_009438.5Link to Protein Sequence:NP_033464.2Re-query CCDS DB by Nucleotide ID:NM_009438Re-query CCDS DB by Protein ID:NP_033464Link to BLAST:NP_033464.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033464.2 203 P19253 203 100% 0 0

Chromosomal Locations for CCDS 21230.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 45125946 45126032 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45126115 45126237 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45126478 45126537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45126709 45126794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45126991 45127092 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45127209 45127274 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45127496 45127568 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 45128700 45128714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (612 nt):
ATGGCGGAGGGGCAGGTTCTGGTATTGGATGGCCGAGGCCATCTTCTTGGCCGCCTGGCGGCCATTGTGG
CCAAGCAGGTACTTCTGGGCCGGAAGGTGGTGGTCGTACGCTGTGAAGGCATCAACATTTCTGGAAACTT
CTACAGAAACAAGTTAAAGTATCTGGCCTTTCTCCGGAAGCGGATGAATACCAACCCCTCCCGAGGCCCC
TACCACTTCCGAGCCCCCAGCCGCATTTTCTGGCGCACTGTGCGAGGCATGCTGCCCCACAAGACCAAGA
GAGGCCAGGCTGCCCTGGAGCGCCTCAAGGTGTTGGATGGGATCCCTCCACCCTATGACAAGAAAAAGCG
GATGGTGGTCCCTGCTGCTCTCAAGGTTGTTCGGCTGAAGCCTACCAGAAAGTTTGCTTACCTGGGGCGT
CTGGCGCATGAGGTCGGGTGGAAGTACCAGGCAGTGACAGCCACTCTGGAGGAGAAACGGAAGGAAAAGG
CCAAGATGCACTATCGGAAGAAGAAGCAGATCTTGAGGTTACGGAAACAGGCAGAAAAGAATGTGGAGAA
GAAAATCTGCAAGTTCACAGAGGTCCTCAAGACCAACGGACTCCTGGTGTGA

Translation (203 aa):
MAEGQVLVLDGRGHLLGRLAAIVAKQVLLGRKVVVVRCEGINISGNFYRNKLKYLAFLRKRMNTNPSRGP
YHFRAPSRIFWRTVRGMLPHKTKRGQAALERLKVLDGIPPPYDKKKRMVVPAALKVVRLKPTRKFAYLGR
LAHEVGWKYQAVTATLEEKRKEKAKMHYRKKKQILRLRKQAEKNVEKKICKFTEVLKTNGLLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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