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Report for CCDS21182.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21182.1 Public Mus musculus 7 Klk8 23 108 98 CCDS HistoryNCBI Gene:259277Re-query CCDS DB by CCDS ID:21182.1Re-query CCDS DB by GeneID:259277See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21182.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000085461.3 ENSMUSP00000082588.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000085461.3Link to Ensembl Protein Viewer:ENSMUSP00000082588.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000085461Re-query CCDS DB by Protein ID:ENSMUSP00000082588
Original member Current member NCBI NM_001324398.1 NP_001311327.1 Accepted alive Link to Nucleotide Sequence:NM_001324398.1Link to Protein Sequence:NP_001311327.1Re-query CCDS DB by Nucleotide ID:NM_001324398Re-query CCDS DB by Protein ID:NP_001311327Link to BLAST:NP_001311327.1
Original member Current member NCBI NM_008940.3 NP_032966.1 Accepted alive Link to Nucleotide Sequence:NM_008940.3Link to Protein Sequence:NP_032966.1Re-query CCDS DB by Nucleotide ID:NM_008940Re-query CCDS DB by Protein ID:NP_032966Link to BLAST:NP_032966.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001311327.1 260 Q61955 260 100% 0 0
NP_032966.1 260 Q61955 260 100% 0 0

Chromosomal Locations for CCDS 21182.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 43798063 43798132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43798624 43798783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43799065 43799327 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43802080 43802213 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 43803614 43803769 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (783 nt):
ATGGGACGCCCCCCACCCTGTGCAATCCAGCCGTGGATCCTTCTGCTTCTGTTCATGGGAGCGTGGGCAG
GGCTCACCAGAGCTCAGGGCTCCAAGATCCTGGAAGGTCGAGAGTGTATACCCCACTCCCAGCCTTGGCA
GGCAGCCTTGTTCCAGGGCGAGAGACTGATCTGTGGGGGTGTCCTGGTTGGAGACAGATGGGTCCTCACG
GCAGCCCACTGCAAAAAACAGAAGTACTCCGTGCGTCTGGGTGATCATAGCCTCCAGAGCAGAGATCAGC
CGGAGCAGGAGATCCAGGTGGCTCAGTCTATCCAGCATCCTTGCTACAACAACAGCAACCCAGAAGATCA
CAGTCACGATATAATGCTCATTCGACTGCAGAACTCAGCAAACCTCGGGGACAAGGTGAAGCCGGTCCAA
CTGGCCAATCTGTGTCCCAAAGTTGGCCAGAAGTGCATCATATCAGGCTGGGGCACTGTCACCAGCCCTC
AAGAGAACTTTCCAAACACCCTCAACTGTGCGGAAGTGAAAATCTATTCCCAGAACAAGTGTGAGAGAGC
CTATCCAGGGAAGATCACCGAGGGCATGGTCTGTGCTGGCAGCAGCAATGGAGCTGACACGTGCCAGGGT
GACTCAGGAGGCCCTCTGGTGTGCGACGGGATGCTCCAGGGCATCACCTCATGGGGCTCAGACCCCTGTG
GGAAACCCGAGAAACCTGGAGTCTACACCAAAATCTGCCGCTACACTACCTGGATCAAGAAGACCATGGA
CAACAGGGACTGA

Translation (260 aa):
MGRPPPCAIQPWILLLLFMGAWAGLTRAQGSKILEGRECIPHSQPWQAALFQGERLICGGVLVGDRWVLT
AAHCKKQKYSVRLGDHSLQSRDQPEQEIQVAQSIQHPCYNNSNPEDHSHDIMLIRLQNSANLGDKVKPVQ
LANLCPKVGQKCIISGWGTVTSPQENFPNTLNCAEVKIYSQNKCERAYPGKITEGMVCAGSSNGADTCQG
DSGGPLVCDGMLQGITSWGSDPCGKPEKPGVYTKICRYTTWIKKTMDNRD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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