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Report for CCDS2118.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2118.1 Public Homo sapiens 2 RABL2A 24 110 108 CCDS HistoryNCBI Gene:11159Re-query CCDS DB by CCDS ID:2118.1Re-query CCDS DB by GeneID:11159See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2118.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000393166.7 ENSP00000376871.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393166.7Link to Ensembl Protein Viewer:ENSP00000376871.3Re-query CCDS DB by Nucleotide ID:ENST00000393166Re-query CCDS DB by Protein ID:ENSP00000376871
Original member Current member EBI ENST00000393167.7 ENSP00000376872.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393167.7Link to Ensembl Protein Viewer:ENSP00000376872.3Re-query CCDS DB by Nucleotide ID:ENST00000393167Re-query CCDS DB by Protein ID:ENSP00000376872
Original member Current member NCBI NM_001354416.2 NP_001341345.1 Accepted alive Link to Nucleotide Sequence:NM_001354416.2Link to Protein Sequence:NP_001341345.1Re-query CCDS DB by Nucleotide ID:NM_001354416Re-query CCDS DB by Protein ID:NP_001341345Link to BLAST:NP_001341345.1
Original member Current member NCBI NM_007082.5 NP_009013.1 Accepted alive Link to Nucleotide Sequence:NM_007082.5Link to Protein Sequence:NP_009013.1Re-query CCDS DB by Nucleotide ID:NM_007082Re-query CCDS DB by Protein ID:NP_009013Link to BLAST:NP_009013.1
Original member Current member NCBI NM_013412.4 NP_038198.1 Accepted alive Link to Nucleotide Sequence:NM_013412.4Link to Protein Sequence:NP_038198.1Re-query CCDS DB by Nucleotide ID:NM_013412Re-query CCDS DB by Protein ID:NP_038198Link to BLAST:NP_038198.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001341345.1 228 Q9UBK7-1 228 100% 0 0
NP_009013.1 228 Q9UBK7-1 228 100% 0 0
NP_038198.1 228 Q9UBK7-1 228 100% 0 0

Chromosomal Locations for CCDS 2118.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113628607 113628713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113632915 113632944 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113634153 113634232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113635051 113635130 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113640894 113641005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113641356 113641450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113641781 113641864 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113642031 113642129 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (687 nt):
ATGGCAGAAGACAAAACCAAACCGAGTGAGTTGGACCAAGGGAAGTATGATGCTGATGACAACGTGAAGA
TCATCTGCCTGGGAGACAGCGCAGTGGGCAAATCCAAACTCATGGAGAGATTTCTCATGGATGGCTTTCA
GCCACAGCAGCTGTCCACGTACGCCCTGACCCTGTACAAGCACACAGCCACGGTAGATGGCAAGACCATC
CTTGTGGACTTTTGGGACACGGCAGGCCAGGAGCGGTTCCAGAGCATGCATGCCTCCTACTACCACAAGG
CCCATGCCTGCATCATGGTGTTTGATATACAGAGGAAAGTCACCTATAGGAACCTGAGCACCTGGTATAC
AGAGCTTCGGGAGTTCAGGCCAGAGATCCCATGCATCGTGGTGGCCAATAAAATTGATGACATAAACGTG
ACCCAAAAAAGCTTCAATTTTGCCAAGAAGTTCTCCCTGCCCCTGTATTTCGTCTCGGCTGCTGATGGTA
CCAATGTTGTGAAGCTCTTCAATGATGCAATTCGATTAGCTGTGTCTTACAAACAGAACTCCCAGGACTT
CATGGATGAGATTTTTCAGGAGCTCGAGAACTTCAGCTTGGAGCAGGAAGAGGAGGACGTGCCAGACCAG
GAACAGAGCAGCAGCATCGAGACCCCATCAGAGGAGGTGGCCTCTCCCCACAGCTGA

Translation (228 aa):
MAEDKTKPSELDQGKYDADDNVKIICLGDSAVGKSKLMERFLMDGFQPQQLSTYALTLYKHTATVDGKTI
LVDFWDTAGQERFQSMHASYYHKAHACIMVFDIQRKVTYRNLSTWYTELREFRPEIPCIVVANKIDDINV
TQKSFNFAKKFSLPLYFVSAADGTNVVKLFNDAIRLAVSYKQNSQDFMDEIFQELENFSLEQEEEDVPDQ
EQSSSIETPSEEVASPHS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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