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Report for CCDS2115.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2115.1 Public Homo sapiens 2 IL1RN 24 110 108 CCDS HistoryNCBI Gene:3557Re-query CCDS DB by CCDS ID:2115.1Re-query CCDS DB by GeneID:3557See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2115.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000361779.7 ENSP00000354816.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000361779.7Link to Ensembl Protein Viewer:ENSP00000354816.3Re-query CCDS DB by Nucleotide ID:ENST00000361779Re-query CCDS DB by Protein ID:ENSP00000354816
Original member Current member EBI ENST00000409052.6 ENSP00000387210.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000409052.6Link to Ensembl Protein Viewer:ENSP00000387210.1Re-query CCDS DB by Nucleotide ID:ENST00000409052Re-query CCDS DB by Protein ID:ENSP00000387210
Original member Current member EBI ENST00000696879.1 ENSP00000512947.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696879.1Link to Ensembl Protein Viewer:ENSP00000512947.1Re-query CCDS DB by Nucleotide ID:ENST00000696879Re-query CCDS DB by Protein ID:ENSP00000512947
Original member Current member EBI ENST00000696880.1 ENSP00000512948.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696880.1Link to Ensembl Protein Viewer:ENSP00000512948.1Re-query CCDS DB by Nucleotide ID:ENST00000696880Re-query CCDS DB by Protein ID:ENSP00000512948
Original member Current member EBI ENST00000696881.1 ENSP00000512949.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000696881.1Link to Ensembl Protein Viewer:ENSP00000512949.1Re-query CCDS DB by Nucleotide ID:ENST00000696881Re-query CCDS DB by Protein ID:ENSP00000512949
Original member Current member NCBI NM_001318914.2 NP_001305843.1 Accepted alive Link to Nucleotide Sequence:NM_001318914.2Link to Protein Sequence:NP_001305843.1Re-query CCDS DB by Nucleotide ID:NM_001318914Re-query CCDS DB by Protein ID:NP_001305843Link to BLAST:NP_001305843.1
Original member Current member NCBI NM_001379360.1 NP_001366289.1 Accepted alive Link to Nucleotide Sequence:NM_001379360.1Link to Protein Sequence:NP_001366289.1Re-query CCDS DB by Nucleotide ID:NM_001379360Re-query CCDS DB by Protein ID:NP_001366289Link to BLAST:NP_001366289.1
Original member Current member NCBI NM_173843.3 NP_776215.1 Accepted alive Link to Nucleotide Sequence:NM_173843.3Link to Protein Sequence:NP_776215.1Re-query CCDS DB by Nucleotide ID:NM_173843Re-query CCDS DB by Protein ID:NP_776215Link to BLAST:NP_776215.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001305843.1 143 P18510-4 143 100% 0 0
NP_001366289.1 143 P18510-4 143 100% 0 0
NP_776215.1 143 P18510-4 143 100% 0 0

Chromosomal Locations for CCDS 2115.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 113127727 113127740 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113129576 113129664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113131045 113131157 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 113132656 113132871 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (432 nt):
ATGCAAGCCTTCAGAATCTGGGATGTTAACCAGAAGACCTTCTATCTGAGGAACAACCAACTAGTTGCTG
GATACTTGCAAGGACCAAATGTCAATTTAGAAGAAAAGATAGATGTGGTACCCATTGAGCCTCATGCTCT
GTTCTTGGGAATCCATGGAGGGAAGATGTGCCTGTCCTGTGTCAAGTCTGGTGATGAGACCAGACTCCAG
CTGGAGGCAGTTAACATCACTGACCTGAGCGAGAACAGAAAGCAGGACAAGCGCTTCGCCTTCATCCGCT
CAGACAGTGGCCCCACCACCAGTTTTGAGTCTGCCGCCTGCCCCGGTTGGTTCCTCTGCACAGCGATGGA
AGCTGACCAGCCCGTCAGCCTCACCAATATGCCTGACGAAGGCGTCATGGTCACCAAATTCTACTTCCAG
GAGGACGAGTAG

Translation (143 aa):
MQAFRIWDVNQKTFYLRNNQLVAGYLQGPNVNLEEKIDVVPIEPHALFLGIHGGKMCLSCVKSGDETRLQ
LEAVNITDLSENRKQDKRFAFIRSDSGPTTSFESAACPGWFLCTAMEADQPVSLTNMPDEGVMVTKFYFQ
EDE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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