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Report for CCDS21137.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21137.1 Public Mus musculus 7 Pdcd2l 23 108 98 CCDS HistoryNCBI Gene:68079Re-query CCDS DB by CCDS ID:21137.1Re-query CCDS DB by GeneID:68079See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21137.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002710.9 ENSMUSP00000002710.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002710.9Link to Ensembl Protein Viewer:ENSMUSP00000002710.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000002710Re-query CCDS DB by Protein ID:ENSMUSP00000002710
Original member Current member NCBI NM_026549.4 NP_080825.1 Accepted alive Link to Nucleotide Sequence:NM_026549.4Link to Protein Sequence:NP_080825.1Re-query CCDS DB by Nucleotide ID:NM_026549Re-query CCDS DB by Protein ID:NP_080825Link to BLAST:NP_080825.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080825.1 364 Q8C5N5 364 100% 0 0

Chromosomal Locations for CCDS 21137.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 34184681 34184811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34186294 34186442 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34189349 34189456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34192736 34193106 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34196066 34196126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34196272 34196438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 34196536 34196643 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1095 nt):
ATGGCGGCCGTCAGGAAGCCTGTACTGCTGGGACTTCGAGACACGGCGGTGAAGGGCTGCCCCAAAGGGC
CCTCCGCCTGGACCTCTAGCAAGCTGGGTGGCGTTCCGGACGCCCTGCCGGCCGTTACCACTCCGGGGCC
GCAGTGTGGCCGCTGCGCACAGCCGCTCACGCTCGTCGTGCAGGTGTACTGCCCGCTGGACGGCTCCCCG
TTCCATCGGCTTCTGTACGTGTTCGCCTGTGCTCGTCCAGGCTGCGGCAACAGCCAGACGCGCAGCTGGA
AGGTGTTCCGTTCCCAGTGCCTGCAAGTGCCAGAGAAAGAGACTTGGAACGCGCAGAATCAGAGCGATAG
CCTTGCAGCTGAGAATTGGTGTGAAGGCTCACAAGACTGGGGAAGTGACACTGAGGAGACGCCTCCACCA
CCCGCCTCAGATTTGGGAAGTGACTCTAATGATGTCAGAGCACTAGACTGGACTGAGAAGCTCCAAGCTC
TTCGCCTTCAGGACACTGCCCTGGCTGTTACCTGCCCTTCTCCTTCAGGGGAAGGGCTGACAGTCCCCAC
TGCAGTGCCACAGTTCCAGCCCTATTATATCTGTGTTGCTGAAGAGGAGGATTATGGCAGCGTTGTGGAT
CTTGATCATGCGCACAGCCTTCTGCAGGAGTACCAGCGGAGAGAAGGGGTGGACATGGAGCAGCTGCTTT
CCCTAGGCTCTAGTGACGGGGATGAAAAGTACGAGAAGACCACAGTTAGCAGTGGGGATCCAACGTTTTA
TAGGTTCATGAAGAGAATTGCTGCTTGCCAGGAGCAGATTTTGAGGTATTCGTGGAGTGGAGAGCCTCTC
TTTCTGTCCTGCCCCACATTTGAAGTCTCTGAGGTCCCAGCCTGCAGTGGCTGTGGAGGCCAGAGGACGT
TTGAGTTTCAGCTTATGCCAGCACTGGTCAGCATGCTCAGCAGTGCTAATCTAGGTCTTGCCGTGGAATT
TGGAACGATTCTCGTTTACACATGTAAACAGAGTTGCTGGCCTCCAAATCAGCAGATGCCCATGGAAGAA
TTCTGTGTTCTACAAGAAGACCCAGATGAATTTTTATTTAAGTAG

Translation (364 aa):
MAAVRKPVLLGLRDTAVKGCPKGPSAWTSSKLGGVPDALPAVTTPGPQCGRCAQPLTLVVQVYCPLDGSP
FHRLLYVFACARPGCGNSQTRSWKVFRSQCLQVPEKETWNAQNQSDSLAAENWCEGSQDWGSDTEETPPP
PASDLGSDSNDVRALDWTEKLQALRLQDTALAVTCPSPSGEGLTVPTAVPQFQPYYICVAEEEDYGSVVD
LDHAHSLLQEYQRREGVDMEQLLSLGSSDGDEKYEKTTVSSGDPTFYRFMKRIAACQEQILRYSWSGEPL
FLSCPTFEVSEVPACSGCGGQRTFEFQLMPALVSMLSSANLGLAVEFGTILVYTCKQSCWPPNQQMPMEE
FCVLQEDPDEFLFK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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