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Report for CCDS21093.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21093.1 Public Mus musculus 7 Prodh2 23 108 98 CCDS HistoryNCBI Gene:56189Re-query CCDS DB by CCDS ID:21093.1Re-query CCDS DB by GeneID:56189See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21093.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000058280.12 ENSMUSP00000062214.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000058280.12Link to Ensembl Protein Viewer:ENSMUSP00000062214.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000058280Re-query CCDS DB by Protein ID:ENSMUSP00000062214
Original member NCBI NM_019546.5 NP_062419.2 Updated not alive Link to Nucleotide Sequence:NM_019546.5Link to Protein Sequence:NP_062419.2Re-query CCDS DB by Nucleotide ID:NM_019546Re-query CCDS DB by Protein ID:NP_062419
Current member NCBI NM_019546.6 NP_062419.2 Accepted alive Link to Nucleotide Sequence:NM_019546.6Link to Protein Sequence:NP_062419.2Re-query CCDS DB by Nucleotide ID:NM_019546Re-query CCDS DB by Protein ID:NP_062419Link to BLAST:NP_062419.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_062419.2 456 Q8VCZ9 456 100% 0 0

Chromosomal Locations for CCDS 21093.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 30493684 30493857 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30493932 30494128 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30494212 30494350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30494438 30494524 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30506221 30506301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30506377 30506532 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30506611 30506777 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30509767 30509877 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30511138 30511223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 30512810 30512982 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1371 nt):
ATGATCTGGACGCGTCTGCCGCTGTATGGCCCCTCCAAGCCCTCTACAGGTGGCTGGCAGCCCCTGCGCT
TTGATGGTGGGGCCTTCCATGTCAAGGGAACCGCAGAACTGGCACGGGCTTTGCTAGTGCTTCGCCTATG
CGCCTGGCCCCCTTTGGTCACTCATGGACTAGCGTTTCAGGCCTGGTCTCAGCGACTCCTGGGATCCCGG
CTCTCAGGCGCACTTCTTCGAGCATCCATCTACGGGCAGTTTGTGGCCGGGGAGACAGCAGAGGAAGTGA
GGAACTGTGTCGGGCAGCTGCAGGCCCTGGGACTCCAGCCCCTGTTGGCAGTACCCACCGAGGAGGAACC
AGACTCCACTGCCAAGACCAGTGAGGTCTGGTATGAGGAGAACCTTAGCGCCATGCTGCGCTGTGTGGAC
TTATCCCGAGCCCTCGTGGACGCCCACGGCCCAGCCAGGAACAGCCTCATGCAGCTGAAGGTGACCGCGC
TAGCCAGCACTCGGCTTTGTAAAGAGCTGTCGGCTTGGATCCAAAGACCCAGAGGCTCCTCGGAGCTGAG
CCCTGAGAGGCTGGCAGAAGCCATGGACTCGGGTCGGAACCTCCAGCTCTCCTGCCTCAGCACAGAACAG
AATCAGCACCTGCAGGCCTCCCTCAGCCGCTTGCACCGAGTGGCACAGCACGCCCGGGCGAAGTGTGTGC
GGCTGCTGGTAGATGCTGAATATACTTTCATTAACCCTGCACTGTCCCTGCTGGTGGCTGCCCTGGCTGT
GCGCTGGAACAGCCCTGAGGAAGGTGGTCCGTGGGTGTGGAACACTTACCAGGCCTATCTAAAGGACACT
CACCAACGGCTGGAGCAGGACGCCGAGGCAGCACACAAGGCTGGCCTGGCATTTGGGGTGAAGTTGGTGC
GAGGTGCCTATCTGGACAAGGAGAGATCCATGACACAGCTCCAAGGGAAGGAAGACTGTACCCAGCCTGA
CTATGAGGCCACTAGTCGGAGTTACAGCCGCTGTCTAGAGCTGATGCTGCGCTGCGTGTCGAACCACGGT
CCCCCGTGTCACCTCATGGTGGCTTCCCACAATGAAGAATCCGTTCGCCAGGCAACTAAGCGCATGTGGG
AGCTGGGCATTCCTCTGGATGGGCCTGTCTGTTTTGGACAACTTCTGGGCATGTGTGACCATGTCTCCCT
GGCATTAGGGCAGGCTGGATATATGGTGTACAAGTCTATTCCCTATGGCTGCCTGGAGGAGGTGATTCCC
TACCTGATCCGAAGAGCCCAGGAGAACAGGAGTGTGCTGCAGGGTGCCCGCAGGGAGCAGGCACTACTCA
GCCAGGAACTGTGGCGGAGACTGCTGGGAAGGACGGCCTAA

Translation (456 aa):
MIWTRLPLYGPSKPSTGGWQPLRFDGGAFHVKGTAELARALLVLRLCAWPPLVTHGLAFQAWSQRLLGSR
LSGALLRASIYGQFVAGETAEEVRNCVGQLQALGLQPLLAVPTEEEPDSTAKTSEVWYEENLSAMLRCVD
LSRALVDAHGPARNSLMQLKVTALASTRLCKELSAWIQRPRGSSELSPERLAEAMDSGRNLQLSCLSTEQ
NQHLQASLSRLHRVAQHARAKCVRLLVDAEYTFINPALSLLVAALAVRWNSPEEGGPWVWNTYQAYLKDT
HQRLEQDAEAAHKAGLAFGVKLVRGAYLDKERSMTQLQGKEDCTQPDYEATSRSYSRCLELMLRCVSNHG
PPCHLMVASHNEESVRQATKRMWELGIPLDGPVCFGQLLGMCDHVSLALGQAGYMVYKSIPYGCLEEVIP
YLIRRAQENRSVLQGARREQALLSQELWRRLLGRTA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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