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Report for CCDS21024.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21024.2 Public Mus musculus 7 Hipk4 23 108 98 CCDS HistoryNCBI Gene:233020Re-query CCDS DB by CCDS ID:21024.2Re-query CCDS DB by GeneID:233020See the combined annotation on chromosome 7 in Sequence Viewer

Public Note for CCDS 21024.1
The coding region has been updated to extend the N-terminus to one that is more supported by available conservation data.

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 21024.2

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000108353.8 ENSMUSP00000103990.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108353.8Link to Ensembl Protein Viewer:ENSMUSP00000103990.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000108353Re-query CCDS DB by Protein ID:ENSMUSP00000103990
Original member Current member NCBI NM_001033315.2 NP_001028487.2 Accepted alive Link to Nucleotide Sequence:NM_001033315.2Link to Protein Sequence:NP_001028487.2Re-query CCDS DB by Nucleotide ID:NM_001033315Re-query CCDS DB by Protein ID:NP_001028487Link to BLAST:NP_001028487.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001028487.2 616 Q3V016-1 616 100% 0 0

Chromosomal Locations for CCDS 21024.2

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 27523517 27523981 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27528296 27528652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27528949 27529797 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 27530688 27530867 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1851 nt):
ATGGCCACCATCCAGTCAGAGACTGACTGCTACGACATCATTGAAGTTCTGGGCAAGGGCACTTTTGGAG
AGGTGGCCAAGGGCTGGCGTCGGAGTACAGGTGAAATGGTGGCCATCAAGATCCTGAAGAACGATGCGTA
CCGAAGCCGCATCATCAAGAATGAGCTGAAGCTGCTGCGCTGCGTGCGAGGCCTGGACCCTGACGAGGCC
CACGTTATCCGCTTCCTTGAGTTCTTCCACGATGCCCTCAAGTTCTACCTGGTCTTCGAGCTTTTGGAGC
AAAACCTCTTTGAGTTCCAGAAAGAGAACAACTTCGCACCCCTTCCTGCCAGGCACATCCGCACGGTCAC
ACTGCAGGTACTAAGAGCGCTGGCCCGGCTCAAGGAACTGGCCATCATCCACGCTGACCTCAAGCCTGAA
AACATTATGTTGGTAGACCAGACGCGCTGCCCCTTCAGGGTCAAGGTGATCGACTTTGGCTCGGCCAGCA
TATTCAGTGAGGTACGCTATGTGAAGGAGCCTTACATCCAGTCCCGCTTCTACAGGGCCCCAGAGATCCT
GCTGGGGCTGCCCTTCTGTGAGAAGGTGGACGTGTGGTCTCTGGGCTGTGTCATGGCCGAGCTACATCTG
GGCTGGCCTCTCTACCCAGGCAACAATGAGTATGACCAGGTGCGCTACATCTGTGAGACCCAGGGCTTAC
CCAAGCCCCATTTGCTGCATGCGGCTCGCAAGGCTCACCACTTCTTCAAGCGTAACCCCCACCCCGATGC
CACCAACCCCTGGCAGCTGAAGTCCTCTGCTGACTACCTAGCTGAGACCAAGGTACGTCCTCTGGAGCGC
CGCAAGTACATGCTCAAATCCTTGGACCAGATTGAGACAGTGAATGGTGGTGGAGCTGTGAGCCGGCTGA
GTTTTCCAGACCGGGAGGCCCTGGCGGAACACGCAGACCTCAAGAGCATGGTGGAGCTGATCAAACGCAT
GCTGACATGGGAGTCGCACGAACGCATCAGTCCCAGTGCGGCCCTGCGTCACCCCTTCGTGTCCATGCAG
CAGCTGCGGAGTGCCCACGAGGCCACCCGCTACTACCAGCTGTCGCTCAGAGGCTGTCGGCTGTCCCTGC
AGGTGGATGGCAAGCCACCCCCACCTGTCATAGCCAGCGCAGAGGACGGGCCTCCCTACTACCGCCTGGC
TGAGGAGGAGGAGACTGCAGGCCTGGGTGGTGTGACAGGCAGTGGGTCCTTCTTCAGGGAGGACAAGGCT
CCGGGAATGCAGAGGGCCATCGACCAGCTCGATGACCTGAGTCTGCAAGAGGCCAGACGGGGGCTGTGGA
GCGACACACGGGCCGACATGGTCTCTGACATGCTGGTTCCACTCAAAGTGGCCAGTACCAGCCACCGAGT
CCCTGACTCAGGCCCAGAGCCTATCCTGGCCTTCTACGGCAGCCGATTGACCGGCCGCCATAAGGCCCGC
AAGGCCCCAGCAGGCTCCAAATCTGACTCCAACTTCAGTAACCTCATTCGGCTGAGCCAGGCCTCACCTG
AGGATGCCGGGCCCTGTCGGGGCAGTGGCTGGGAGGAAGGAGAAGGCCGCACGACCTCCACAGAGCCGTC
TGTCATCCCACAACGGGAAGGAGATGGGCCTGGCATCAAAGACAGGCCCATGGATGCCGAGAGGCCAGGC
CCTGAGCTCTTTGATCCCAGCAGCTGTCCTGGAGAGTGGCTGAGTGAGCCAGAATGGACCCTAGAGGGCA
TCCGGGGGTCTCGAGCTCAAGGGCTCCCAGCTCACCATCCCCACCCCCACGGGCCACCCAGGACCACCAG
CTTTCTGCAGCATGTTGGAGGGCACCACTGA

Translation (616 aa):
MATIQSETDCYDIIEVLGKGTFGEVAKGWRRSTGEMVAIKILKNDAYRSRIIKNELKLLRCVRGLDPDEA
HVIRFLEFFHDALKFYLVFELLEQNLFEFQKENNFAPLPARHIRTVTLQVLRALARLKELAIIHADLKPE
NIMLVDQTRCPFRVKVIDFGSASIFSEVRYVKEPYIQSRFYRAPEILLGLPFCEKVDVWSLGCVMAELHL
GWPLYPGNNEYDQVRYICETQGLPKPHLLHAARKAHHFFKRNPHPDATNPWQLKSSADYLAETKVRPLER
RKYMLKSLDQIETVNGGGAVSRLSFPDREALAEHADLKSMVELIKRMLTWESHERISPSAALRHPFVSMQ
QLRSAHEATRYYQLSLRGCRLSLQVDGKPPPPVIASAEDGPPYYRLAEEEETAGLGGVTGSGSFFREDKA
PGMQRAIDQLDDLSLQEARRGLWSDTRADMVSDMLVPLKVASTSHRVPDSGPEPILAFYGSRLTGRHKAR
KAPAGSKSDSNFSNLIRLSQASPEDAGPCRGSGWEEGEGRTTSTEPSVIPQREGDGPGIKDRPMDAERPG
PELFDPSSCPGEWLSEPEWTLEGIRGSRAQGLPAHHPHPHGPPRTTSFLQHVGGHH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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