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Report for CCDS20970.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20970.1 Public Mus musculus 7 Grik5 23 108 98 CCDS HistoryNCBI Gene:14809Re-query CCDS DB by CCDS ID:20970.1Re-query CCDS DB by GeneID:14809See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20970.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000003468.9 ENSMUSP00000003468.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000003468.9Link to Ensembl Protein Viewer:ENSMUSP00000003468.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000003468Re-query CCDS DB by Protein ID:ENSMUSP00000003468
Original member NCBI NM_008168.2 NP_032194.2 Updated not alive Link to Nucleotide Sequence:NM_008168.2Link to Protein Sequence:NP_032194.2Re-query CCDS DB by Nucleotide ID:NM_008168Re-query CCDS DB by Protein ID:NP_032194
Current member NCBI NM_008168.3 NP_032194.2 Accepted alive Link to Nucleotide Sequence:NM_008168.3Link to Protein Sequence:NP_032194.2Re-query CCDS DB by Nucleotide ID:NM_008168Re-query CCDS DB by Protein ID:NP_032194Link to BLAST:NP_032194.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_032194.2 979 Q61626 979 100% 0 0

Chromosomal Locations for CCDS 20970.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 25010369 25010794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25013586 25013707 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25013790 25013918 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25015305 25015530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25015808 25015973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25022441 25022614 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25022986 25023095 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25023283 25023396 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25046174 25046377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25058284 25058391 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25058494 25058598 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25058941 25059093 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25060470 25060631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25060730 25060783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25062878 25063056 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25065129 25065294 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25065373 25065470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25068010 25068174 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 25068444 25068522 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2940 nt):
ATGCCGGCTGAGCTGCTGCTGCTGCTGATAGTCGCCTTCGCCAATCCCAGCTGCCAGGTGCTGTCATCAC
TGCGCATGGCTGCAATCCTGGACGACCAGACCGTGTGTGGCCGTGGTGAGCGTCTGGCCCTGGCCCTGGC
CCGAGAGCAGATCAATGGGATCATCGAGGTCCCAGCCAAGGCCAGAGTGGAAGTAGACATCTTTGAGCTG
CAGCGGGACAGCCAGTACGAGACCACGGACACCATGTGTCAGATCCTGCCCAAGGGGGTTGTATCTGTCT
TGGGACCCTCCTCCAGCCCAGCTTCTGCCTCCACCGTGAGCCATATCTGTGGGGAGAAGGAGATTCCCCA
CATCAAGGTGGGTCCTGAGGAGACGCCCCGCCTTCAGTACCTTCGCTTCGCATCTGTCAGCCTGTACCCC
AGTAATGAAGATGTCAGCCTGGCAGTCTCCCGAATCCTCAAGTCCTTTAACTACCCCTCAGCTAGCCTCA
TCTGCGCCAAGGCTGAGTGCCTGCTGCGGCTAGAAGAACTGGTGCGAGGCTTCCTCATCTCCAAGGAGAC
ACTGTCCGTGAGGATGCTTGATGACAGCCGGGACCCCACGCCGCTACTCAAGGAGATCCGAGATGACAAA
GTGTCCACCATCATCATTGATGCCAATGCGTCCATCTCCCACCTTGTCCTCCGTAAGGCTTCGGAGCTGG
GAATGACCTCAGCGTTTTACAAGTACATCCTCACCACCATGGACTTTCCCATCCTGCATCTGGATGGTAT
CGTGGAGGACTCCTCCAACATCCTGGGCTTTTCCATGTTCAACACCTCCCACCCCTTCTACCCAGAGTTT
GTGCGCAGCCTCAACATGTCCTGGAGGGAGAACTGTGAAGCCAGCACCTATCCTGGCCCTGCGCTGTCCG
CAGCCCTGATGTTTGACGCTGTGCACGTGGTGGTAAGCGCTGTCCGAGAACTGAACCGAAGCCAGGAGAT
TGGCGTCAAGCCACTGGCCTGCACTTCGGCCAACATTTGGCCCCATGGGACCAGCCTTATGAACTACCTT
CGAATGGTAGAGTATGACGGGCTGACCGGGCGGGTTGAGTTCAACAGCAAAGGGCAGAGGACCAACTACA
CACTACGCATCCTGGAGAAGTCCCGCCAGGGCCACCGTGAGATAGGGGTGTGGTACTCTAACCGGACCCT
GGCCATGAATGCCACCACCCTGGACATCAACCTGTCACAGACTCTAGCCAACAAGACTCTGGTGGTCACA
ACTATCCTGGAGAACCCGTATGTTATGCGCCGGCCCAACTTCCAGGCCTTGTCAGGGAATGAGCGCTTCG
AGGGCTTCTGCGTGGACATGCTCAGGGAGCTGGCCGAGCTGCTGCGCTTCCGATACCGCCTGCGGTTGGT
AGAGGACGGACTCTACGGGGCACCTGAGCCCAACGGTTCCTGGACAGGCATGGTTGGAGAACTCATCAAC
CGGAAGGCAGACCTGGCTGTGGCAGCCTTCACCATCACCGCCGAGAGGGAGAAGGTCATCGACTTCTCCA
AGCCCTTCATGACCCTGGGGATCAGCATCCTCTACAGGGTGCACATGGGCCGCAAGCCTGGCTACTTCTC
CTTCCTGGACCCCTTCTCCCCTGCCGTGTGGCTCTTCATGCTTCTTGCCTACCTGGCTGTCAGCTGTGTC
TTGTTCCTGGCTGCCAGGCTGAGCCCTTATGAGTGGTACAACCCACACCCGTGTCTCCGGGCGCGTCCCC
ATATCCTGGAGAACCAGTACACGCTGGGCAACAGCCTCTGGTTCCCCGTGGGTGGCTTCATGCAGCAGGG
CTCGGAGATCATGCCGCGGGCACTGTCCACACGCTGTGTCAGCGGAGTCTGGTGGGCCTTCACCTTGATC
ATCATCTCCTCCTACACGGCCAACCTGGCTGCCTTCCTCACGGTGCAGCGCATGGAGGTGCCGGTGGAGT
CGGCTGACGACCTGGCGGATCAGACCAACATTGAGTACGGCACTATCCACGCTGGCTCCACCATGACCTT
CTTCCAGAACTCGCGGTACCAGACGTACCAGCGGATGTGGAACTACATGCAATCGAAGCAGCCCAGCGTG
TTTGTCAAGAGCACAGAGGAGGGAATCGCCCGCGTCCTCAACTCCCGCTATGCCTTCCTGCTGGAGTCCA
CCATGAACGAGTACCACAGGCGCCTCAATTGCAACCTCACCCAGATCGGGGGCCTCCTCGACACCAAGGG
CTACGGCATCGGCATGCCGCTGGGCTCCCCTTTCCGGGATGAGATCACACTGGCCATCCTGCAGCTCCAG
GAGAACAACAGGCTGGAGATCCTGAAGCGCAAGTGGTGGGAGGGCGGCCGGTGCCCCAAGGAGGAGGACC
ACAGGGCCAAAGGTTTGGGCATGGAGAACATTGGCGGCATTTTTGTCGTGCTGATCTGTGGCCTCATCAT
TGCTGTCTTCGTGGCGGTCATGGAGTTCATCTGGTCCACGCGGAGGTCAGCGGAGTCCGAGGAGGTGTCG
GTGTGCCAGGAGATGCTGCAGGAGCTACGCCACGCCGTGTCTTGCCGAAAGACCTCGCGTTCCCGCCGGC
GCCGGCGCCCTGGTGGCCCGAGCCGGGCCCTGCTGTCGCTGCGCGCAGTCCGCGAGATGCGACTCAGCAA
CGGCAAGCTCTACTCGGCCGGCGCGGGCGGGGACGCGGGCGCGCACGGGGGTCCGCAGCGCCTCCTGGAC
GACCCCGGACCTCCTGGGGGACCCCGGCCCCAGGCTCCCACGCCCTGCACGCACGTGCGCGTCTGCCAGG
AGTGCAGGCGCATCCAGGCGCTGCGAGCTTCGGGGGCCGGGGCGCCCCCACGTGGCCTGGGCACCCCAGC
CGAAGCCACCAGCCCGCCTCGGCCGCGGCCAGGCCCCACCGGACCCCGCGAGCTGACCGAGCACGAATGA

Translation (979 aa):
MPAELLLLLIVAFANPSCQVLSSLRMAAILDDQTVCGRGERLALALAREQINGIIEVPAKARVEVDIFEL
QRDSQYETTDTMCQILPKGVVSVLGPSSSPASASTVSHICGEKEIPHIKVGPEETPRLQYLRFASVSLYP
SNEDVSLAVSRILKSFNYPSASLICAKAECLLRLEELVRGFLISKETLSVRMLDDSRDPTPLLKEIRDDK
VSTIIIDANASISHLVLRKASELGMTSAFYKYILTTMDFPILHLDGIVEDSSNILGFSMFNTSHPFYPEF
VRSLNMSWRENCEASTYPGPALSAALMFDAVHVVVSAVRELNRSQEIGVKPLACTSANIWPHGTSLMNYL
RMVEYDGLTGRVEFNSKGQRTNYTLRILEKSRQGHREIGVWYSNRTLAMNATTLDINLSQTLANKTLVVT
TILENPYVMRRPNFQALSGNERFEGFCVDMLRELAELLRFRYRLRLVEDGLYGAPEPNGSWTGMVGELIN
RKADLAVAAFTITAEREKVIDFSKPFMTLGISILYRVHMGRKPGYFSFLDPFSPAVWLFMLLAYLAVSCV
LFLAARLSPYEWYNPHPCLRARPHILENQYTLGNSLWFPVGGFMQQGSEIMPRALSTRCVSGVWWAFTLI
IISSYTANLAAFLTVQRMEVPVESADDLADQTNIEYGTIHAGSTMTFFQNSRYQTYQRMWNYMQSKQPSV
FVKSTEEGIARVLNSRYAFLLESTMNEYHRRLNCNLTQIGGLLDTKGYGIGMPLGSPFRDEITLAILQLQ
ENNRLEILKRKWWEGGRCPKEEDHRAKGLGMENIGGIFVVLICGLIIAVFVAVMEFIWSTRRSAESEEVS
VCQEMLQELRHAVSCRKTSRSRRRRRPGGPSRALLSLRAVREMRLSNGKLYSAGAGGDAGAHGGPQRLLD
DPGPPGGPRPQAPTPCTHVRVCQECRRIQALRASGAGAPPRGLGTPAEATSPPRPRPGPTGPRELTEHE


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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