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Report for CCDS20817.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20817.1 Public Mus musculus 7 Rps5 23 108 98 CCDS HistoryNCBI Gene:20103Re-query CCDS DB by CCDS ID:20817.1Re-query CCDS DB by GeneID:20103See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20817.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000004554.13 ENSMUSP00000004554.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000004554.13Link to Ensembl Protein Viewer:ENSMUSP00000004554.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000004554Re-query CCDS DB by Protein ID:ENSMUSP00000004554
Original member Current member EBI ENSMUST00000108539.7 ENSMUSP00000104179.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000108539.7Link to Ensembl Protein Viewer:ENSMUSP00000104179.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000108539Re-query CCDS DB by Protein ID:ENSMUSP00000104179
Original member NCBI NM_009095.2 NP_033121.2 Updated not alive Link to Nucleotide Sequence:NM_009095.2Link to Protein Sequence:NP_033121.2Re-query CCDS DB by Nucleotide ID:NM_009095Re-query CCDS DB by Protein ID:NP_033121
Current member NCBI NM_009095.3 NP_033121.2 Accepted alive Link to Nucleotide Sequence:NM_009095.3Link to Protein Sequence:NP_033121.2Re-query CCDS DB by Nucleotide ID:NM_009095Re-query CCDS DB by Protein ID:NP_033121Link to BLAST:NP_033121.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_033121.2 204 P97461 204 100% 0 0

Chromosomal Locations for CCDS 20817.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12922974 12923081 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12925392 12925601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12925737 12925865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12926396 12926494 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 12926572 12926640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (615 nt):
ATGACTGAGTGGGAAGCAGCCACACCAGCGGTGGCAGAGACCCCTGACATCAAGCTCTTTGGGAAATGGA
GCACTGATGACGTGCAGATCAACGATATTTCTCTGCAGGATTACATTGCTGTGAAGGAGAAGTATGCCAA
GTACCTGCCCCACAGTGCCGGACGGTATGCTGCCAAGCGCTTCCGCAAAGCACAATGTCCCATCGTGGAG
CGCCTTACTAACTCCATGATGATGCATGGTCGTAACAACGGCAAGAAGCTCATGACTGTGCGAATTGTCA
AGCATGCCTTTGAGATCATCCACCTGCTCACTGGTGAGAACCCTCTGCAGGTCCTGGTGAATGCTATCAT
CAACAGTGGCCCCCGAGAAGACTCAACACGCATTGGGCGGGCCGGTACAGTGAGACGACAGGCTGTGGAT
GTGTCCCCACTGCGTCGAGTGAATCAGGCCATCTGGCTGCTGTGCACAGGGGCTCGTGAGGCTGCTTTCC
GGAACATCAAGACCATCGCCGAGTGCCTTGCAGATGAGCTCATTAATGCTGCCAAGGGCTCCTCCAATTC
CTATGCCATCAAGAAGAAAGATGAACTGGAGCGTGTGGCCAAGTCTAACCGCTGA

Translation (204 aa):
MTEWEAATPAVAETPDIKLFGKWSTDDVQINDISLQDYIAVKEKYAKYLPHSAGRYAAKRFRKAQCPIVE
RLTNSMMMHGRNNGKKLMTVRIVKHAFEIIHLLTGENPLQVLVNAIINSGPREDSTRIGRAGTVRRQAVD
VSPLRRVNQAIWLLCTGAREAAFRNIKTIAECLADELINAAKGSSNSYAIKKKDELERVAKSNR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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