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Report for CCDS20804.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20804.1 Public Mus musculus 7 Vmn1r78 23 108 98 CCDS HistoryNCBI Gene:171242Re-query CCDS DB by CCDS ID:20804.1Re-query CCDS DB by GeneID:171242See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20804.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000078039.2 ENSMUSP00000077186.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000078039.2Link to Ensembl Protein Viewer:ENSMUSP00000077186.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000078039Re-query CCDS DB by Protein ID:ENSMUSP00000077186
Original member Current member EBI ENSMUST00000228244.1 ENSMUSP00000154016.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228244.1Link to Ensembl Protein Viewer:ENSMUSP00000154016.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228244Re-query CCDS DB by Protein ID:ENSMUSP00000154016
Original member Current member EBI ENSMUST00000228664.1 ENSMUSP00000154797.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000228664.1Link to Ensembl Protein Viewer:ENSMUSP00000154797.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000228664Re-query CCDS DB by Protein ID:ENSMUSP00000154797
Original member Current member NCBI NM_134208.2 NP_598969.2 Accepted alive Link to Nucleotide Sequence:NM_134208.2Link to Protein Sequence:NP_598969.2Re-query CCDS DB by Nucleotide ID:NM_134208Re-query CCDS DB by Protein ID:NP_598969Link to BLAST:NP_598969.2

Chromosomal Locations for CCDS 20804.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 12152464 12153405 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (942 nt):
ATGAAAATGACTCCTGCAAGCTTGGCAACGGGAATATTCTTTTTCTTTCATATTACAGTGGGAATCCTTG
GTAATTCCTCAATACTATTTCATTATGTCTTTATGATAACCACCAGAAAGCATTTAATGCCCAAAGATGT
GATTATAAAGCACTTGACTTTTGCTAACTGCTTAACTATCATTTCAAAAGGCATTCCAGAGACACTGTCA
GATTTGGGATTTAAATATTTCCTGGATGATATTGGTTGTAAATTGGTAGTTTATATTTACCGAATAATGA
GGGGGATGTCCCTGTATGCTATGTGCCTACTGAGTTGCTTCCAAGCAATCACAATCAGCCCCAGCAACAC
CAGGTGGATAATGTTTAAACACAGAGCCACCAAGTACATTGGTCCCTCCTGCTCAGTCAGTTGGCTTGTG
TACATGCTTTTAAACATCTTGACTCCAGCAAGAGTGTTAGGACCCAGTTATAACAAAAATGTAACTAACA
TGGTGAATTATGGATACTGCTCATGGTTTACTTCCAGAAATGTGGCAACTGCTCTGTATATGTTTCTACT
CTGCTTCTCTGATGGCTTGTGCCTGGGTCTCATGGCCTGCTCAAGTATTTCCATGGTGAGTGTCCTCTAC
AGACACAAGAGACAAGTCAAGCATATCCATAGTGCTCAGCATTTTCTAAAAGTCTCTCCTGAGGACCAAG
CCACCAAAACTATCCTCATCCTGGTTTGTACATTTGTCATCTCTTACTCAATCTCTTCTATACATGTAAT
ATTTACAGTCTACTTCAAAGGCTCAGGACTATGGGGAGTAAGTATGTTTATATTTTTAGAATTATGTTTT
CCAATATATTTCCCATTTGTTCTCATCACCAGTTTCAAGTCTAGTTGCAGCTTCTTTTTATCCTTCTGCA
AAAAGAGATGGCTTCCTTCAAATATTGCATGA

Translation (313 aa):
MKMTPASLATGIFFFFHITVGILGNSSILFHYVFMITTRKHLMPKDVIIKHLTFANCLTIISKGIPETLS
DLGFKYFLDDIGCKLVVYIYRIMRGMSLYAMCLLSCFQAITISPSNTRWIMFKHRATKYIGPSCSVSWLV
YMLLNILTPARVLGPSYNKNVTNMVNYGYCSWFTSRNVATALYMFLLCFSDGLCLGLMACSSISMVSVLY
RHKRQVKHIHSAQHFLKVSPEDQATKTILILVCTFVISYSISSIHVIFTVYFKGSGLWGVSMFIFLELCF
PIYFPFVLITSFKSSCSFFLSFCKKRWLPSNIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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