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Report for CCDS20782.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20782.1 Public Mus musculus 7 Zim1 23 108 98 CCDS HistoryNCBI Gene:22776Re-query CCDS DB by CCDS ID:20782.1Re-query CCDS DB by GeneID:22776See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20782.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000002336.15 ENSMUSP00000002336.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000002336.15Link to Ensembl Protein Viewer:ENSMUSP00000002336.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000002336Re-query CCDS DB by Protein ID:ENSMUSP00000002336
Original member Current member EBI ENSMUST00000122432.3 ENSMUSP00000113585.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000122432.3Link to Ensembl Protein Viewer:ENSMUSP00000113585.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000122432Re-query CCDS DB by Protein ID:ENSMUSP00000113585
Original member Current member EBI ENSMUST00000203908.1 ENSMUSP00000145453.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000203908.1Link to Ensembl Protein Viewer:ENSMUSP00000145453.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000203908Re-query CCDS DB by Protein ID:ENSMUSP00000145453
Original member Current member NCBI NM_011769.4 NP_035899.4 Accepted alive Link to Nucleotide Sequence:NM_011769.4Link to Protein Sequence:NP_035899.4Re-query CCDS DB by Nucleotide ID:NM_011769Re-query CCDS DB by Protein ID:NP_035899Link to BLAST:NP_035899.4

Chromosomal Locations for CCDS 20782.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 6676923 6678262 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6682050 6682181 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6682740 6682866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6687684 6687775 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 6688624 6688672 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1740 nt):
ATGAAGAGGAGTGTCTCAGAGGTGAAGACTAAAGCCCCAGTTAATGAAGCCTCACCTTCACCAAGTCCTG
ATCAGACAGCAAACCAGCTCTCTGAAAAGAAGCGAAGAATTCCGATCACGTCGTTGCCAACCTGGTACAA
GGAACCAGTGATCTTCAAAGATGTAGCTGTGTACTTCAGCCAGAAAGAGTGGCAGCTACTGGAGCCTGCT
CAGAAGGACCTGTACAAGGATGTGATGCTGGAGAACTACGAGAACCTGATCTCTGTGGAATATTATATTT
TCAAGCCAAAGTTGATCACCAGGTTGGAGCAAGGAGTTGACCTTTTTGCCAAAGAGAACGATGTTCCTGG
AGACCCCCAGCAAGGTGAGGCAGGAGTCAGCAGAAGTGACACCTCTGCAGGGAAGAAGACAGGGGATAAT
TCCACAAAGGCAGAAATCCGGAAGCCAGACAATTCTAAGACAACATCACTGGAGAAGCAGAAGGCGGCAG
ATCAAGGCCGTGGTTCCCAGAGTTTGAGAGCAGAAAAGACCTCAAAAAGTGATGACAGGCCATCTCAAAA
TAAGGAGAAATGTGCCTCAACTTCGACTACAGAAGCAAGCAAAACCAGCATACCGGGCAATAAGGAGAAT
GAATCTGCAATTCCAGGCACATCTTCGGGTCAAACATCAGCAGCAACTACAACACCACAGAGCGCTCCTT
CGGAAAAGCCGACCTCGGGGAAAGATGTTGAGGGAAAACCACAGACCATGAGGAGCAGTTCCACAAATCC
AAAGCGCAAGCCTGCCCGACAAGGTAAAAACCACTTTAAATGCAAGGAATGCGGGAAAACCTTCAACCAG
ACCCTCCACCTCGTGGAACATGAGCGAATTCACACAGGAGAGAAACCCCACAAGTGTGACACGTGCGGCA
AATCTTTCCGGCACCTCTCATACTTCCTCACACACTACCGAATTCACACGGGAGTGAGACCCTACAAGTG
TAAGGAGTGTGGCAAAGCCTTCAACAGCAGCTCCACTCTCAACAATCACTGCAGGATCCACTCAGGGGAG
AAACCCTTTAAATGTGACGAGTGCGGGAAAACCTTCAAGCAGAGCACAAAGCTCACCCGTCACCAGCGGA
TTCATACCGGGGAGAAGCCCTACAAGTGTGGAGAGTGTAACAAGTGCTTCGGCCGCAGCTCATCCCTGAG
GGAGCACAAGAGGATCCATACCGGAGAGAAGCCGTACTGCTGTCAGGTGTGTGGGAAGACCTTCAGGGTC
AACTCACATCTTTCGGAGCATCAGCGGCTCCATTTAAAGGTGAAGCCGTACAAGTGTGACAAGTGCGGAA
AACACTTCCGAAACAGCTCGTACTTGACGGAGCACAAGCAGATCCATGTGCCTGGGGCCCGAGTGGACTG
CCCGGAGTGTGGGAAAGTCTTCGCTTGCAAAGTAGCCCTTCTCAAGCACCAGAAGAGACACGAGGCAAAC
TCCAGGTACCGGTGCAAGGGGTGTGGAAAGACTTTCAGATGTAAGTCAAGCATCCAAAGGCATGAGAGGC
TGCACGCTGGGGAGAAACCTTTCGTGTGCCACAAGTGTGACAAAGGTTTCACTGACAAAACTACATTGAA
TAATCACTTGAAAATCCACTCTGGAGATAGGCCAGATCCATGCGCCCAGTGCGGGAGAACCTTTAAAAAA
CTGGCTACCCTGCTGATTCACCAGAAAAAGCATATTAAAAAGAAGCCCACAGATGTATAA

Translation (579 aa):
MKRSVSEVKTKAPVNEASPSPSPDQTANQLSEKKRRIPITSLPTWYKEPVIFKDVAVYFSQKEWQLLEPA
QKDLYKDVMLENYENLISVEYYIFKPKLITRLEQGVDLFAKENDVPGDPQQGEAGVSRSDTSAGKKTGDN
STKAEIRKPDNSKTTSLEKQKAADQGRGSQSLRAEKTSKSDDRPSQNKEKCASTSTTEASKTSIPGNKEN
ESAIPGTSSGQTSAATTTPQSAPSEKPTSGKDVEGKPQTMRSSSTNPKRKPARQGKNHFKCKECGKTFNQ
TLHLVEHERIHTGEKPHKCDTCGKSFRHLSYFLTHYRIHTGVRPYKCKECGKAFNSSSTLNNHCRIHSGE
KPFKCDECGKTFKQSTKLTRHQRIHTGEKPYKCGECNKCFGRSSSLREHKRIHTGEKPYCCQVCGKTFRV
NSHLSEHQRLHLKVKPYKCDKCGKHFRNSSYLTEHKQIHVPGARVDCPECGKVFACKVALLKHQKRHEAN
SRYRCKGCGKTFRCKSSIQRHERLHAGEKPFVCHKCDKGFTDKTTLNNHLKIHSGDRPDPCAQCGRTFKK
LATLLIHQKKHIKKKPTDV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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