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Report for CCDS20765.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20765.1 Public Mus musculus 7 Vmn1r63 23 108 98 CCDS HistoryNCBI Gene:81017Re-query CCDS DB by CCDS ID:20765.1Re-query CCDS DB by GeneID:81017See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)


Attributes
CDS uses downstream AUG

Sequence IDs included in CCDS 20765.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000075085.6 ENSMUSP00000074593.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000075085.6Link to Ensembl Protein Viewer:ENSMUSP00000074593.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000075085Re-query CCDS DB by Protein ID:ENSMUSP00000074593
Original member Current member NCBI NM_030742.1 NP_109667.1 Accepted alive Link to Nucleotide Sequence:NM_030742.1Link to Protein Sequence:NP_109667.1Re-query CCDS DB by Nucleotide ID:NM_030742Re-query CCDS DB by Protein ID:NP_109667Link to BLAST:NP_109667.1

Chromosomal Locations for CCDS 20765.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 5802729 5803631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (903 nt):
ATGGAAATGTTGGCTCTTCAGATCCTTTTGCTTTGCCATGTTGTGGTTGGGACTGTGGGCAACATCCTTC
TGTTTGTCCATAACTTCTCTCAAATCTTGACTGACTCCAGACTGAGGCCAATACAGGTCATTCTAATCAA
CTTGGCTGTAGCCAATGCATTCATGCTCCTTCTCTTTGCATATTCATATGATCTTACTGATATTGTTCCC
AGGAAGCCTCCAACTGACCTCAAATGTAAACTTGCATACTTCTTTCACCTGGTGGCTCGAGGCACAATCA
TGTGCTCCACCTGTGTCCTCAGTACATACCAGTTTGTCACTCTTGTTCCTGGTACCTGGGCTAGGGTCAT
GTTCAGCGAAATATCCCCCAAGGTTGTAAGCTATTGTTGTTACAGCTGCTGGTTGTTCAGTGTCTTAAAT
AATGCTTACATGCTAATGAATGTCAGTGGTCCACAGAAATCACACAATGACTCTGATTCTAAAGGCAATT
CAATATGCTCCATCTCTGGGGTCAGTGTAGACATGAATTTCTTGCGGTTTTCCCATGACATCATATTCCT
AAGCATCATGGCCTGGACCAGTGTCTCCATGGTGATTCACCTAAACAGACACCACCAGAGAATGAACCAC
ATACATAAGGTCAATCAAAACAACAGAGGCCATGCTGAGACCAGAGCAGCCCACACCATCCTGATGCTGG
TGGTCACATTTGTGAGCTCATATACTCTAAATTGTATTAGTATTTCATTTCACATTTCCTTTGTGGAATC
TTGTCTCTGGTTGAGGTATGTCACAAAACTCCTGGCTCTAAGCTTCCCCACCATTTCTCCCTTACTGTTG
ATATTTAGGGATTGTAAGGGTCATTGTTCTCTGCGCATCATGTCAGTATGGAAATCTATTTGA

Translation (300 aa):
MEMLALQILLLCHVVVGTVGNILLFVHNFSQILTDSRLRPIQVILINLAVANAFMLLLFAYSYDLTDIVP
RKPPTDLKCKLAYFFHLVARGTIMCSTCVLSTYQFVTLVPGTWARVMFSEISPKVVSYCCYSCWLFSVLN
NAYMLMNVSGPQKSHNDSDSKGNSICSISGVSVDMNFLRFSHDIIFLSIMAWTSVSMVIHLNRHHQRMNH
IHKVNQNNRGHAETRAAHTILMLVVTFVSSYTLNCISISFHISFVESCLWLRYVTKLLALSFPTISPLLL
IFRDCKGHCSLRIMSVWKSI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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