NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS20699.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20699.1 Public Mus musculus 6 Tm7sf3 23 108 98 CCDS HistoryNCBI Gene:67623Re-query CCDS DB by CCDS ID:20699.1Re-query CCDS DB by GeneID:67623See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20699.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000037709.15 ENSMUSP00000045650.9 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000037709.15Link to Ensembl Protein Viewer:ENSMUSP00000045650.9Re-query CCDS DB by Nucleotide ID:ENSMUST00000037709Re-query CCDS DB by Protein ID:ENSMUSP00000045650
Original member Current member NCBI NM_026281.2 NP_080557.2 Accepted alive Link to Nucleotide Sequence:NM_026281.2Link to Protein Sequence:NP_080557.2Re-query CCDS DB by Nucleotide ID:NM_026281Re-query CCDS DB by Protein ID:NP_080557Link to BLAST:NP_080557.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080557.2 565 Q9CRG1 565 99.292% 0 4

Chromosomal Locations for CCDS 20699.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 146603759 146604021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146606128 146606290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146607579 146607676 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146609816 146609968 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146610874 146610954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146613378 146613464 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146618534 146618711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146619840 146620011 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146621875 146621995 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146623564 146623714 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146626096 146626250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 146634386 146634461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1698 nt):
ATGTGGCGGCTGCGCCTGCTGGTCCTAGCGGTGCTGGCGGCGGGCAGCGCCGAGGCCCAGGCGAACTCCA
GCGACGGTTTCCTTGAGTTTTCTGTGGGAAAATTTACATACTTTGTGCTCAGCAAGTCCTCTCCGCAGGA
GGCCGTCCTGCGCCATATTTCAAGCAATGTGACCTTTCTTCTTTTCCAAATACACTCACAGTATCAGAAT
ACCACGGTTTCATTTACTAAGACTCTCCTTCCCAGCACGTCAGGAACAGGCAACGACAGAGGGCTGGTCT
TCATTCTTAGACCGGAGCAGGCAGTGTGTACTTGGTACTTGGAGACGGGAGACACCAAGCCTGTCCAAAG
CGTGGCCCTTACGCTCTCCTACTCAGAAAGAGATCCCATTCCTGGAGGCTGCAATTTGGAGTTTGATTTA
GATATTGACCCCAACCTCTATTTGGACTATAATTTTTTTGAGACAACTATCAAGTTCGCACCAGCAAACA
TAGGCTATGCAAGGGCTACAGAGCCCCCACCGTGTGATGTGAGCACCAGCCGAGAGTCCAGGTGGAGGCT
GCGCTATGACGTGTACCAGTACTTCCTGCCCGAGGGCGACCTCACCGAGGCCTCTCTGCTCCATCATCTT
CAGAGGATGGCCCAGGTGGCTCAGGTGAAGGCCAGTGCCATCAAGGTGGCCACCCTAACAGCTGACGATA
AAACAGCCGTGTCCTTCTCTTCCCTCCCGGGACAAGGAGTCATCTATAATGTCATCGTTTGGGATCCGTC
CCTCAATACTTCTGCTGCTTATGTGCCCGTGCACACATACGCCTGCAGCTTTGAGTCAGTGGATGGTAAC
TGTGCTTTTCCTGGAAGAGTATCTACGAAAGTGTTCTCCACTTTGGTTGCCCTGCTTGGGCTCTTCGTTT
GTTTCTTTGGACACAGATTCTGGAAAACAGATTTATTCTTCATTGGCTTCATCTTCCTGGGGTTCTTCTT
CTACATCCTGATCACCAGACTGACACCCCTTCAGTATGACGTTCGCCTGGCTCTCACCGCTGTAGCTGGC
AGCTTTGGTGGCCTCCTCCTGGTGGCTTCATGGTGGCGATTCGGGATCCTCACACTCTGCATGCTGTGTG
TGGGACTCGTGCTGGGCTTCCTCGTGTCTTCTGGGACTTTCTTCACGCCTCTGGGAAACCTAAATGTTTT
TCATGATGATGGAGTGTTCTGGGTGACGTTCTCCTGCATAGCGCTGCTTGTTCCAGTCATCTTCATGGGC
TGCCTAAGAATCTTGAACATCCTGGCTTGTGGAGTCGTGGGCTCCTACTCCGTGGTGTTGGCTGTTAACA
GTTACATGTTCACAAGCCTCTCCTACATCACCCTGAACGTCCTCAGGAGAGCTCTCAACACAGATTTCCG
AGGGGCTGTCATTAGAGTGCCTTTCCAGACCAACGACTACATCATCCTGGCCGTGTGGGGGATGCTGGCT
GTCAGTGGAATTACACTTCAGATTCGAAGAGAAAGAGGACAGCCGCCTTTCCCTCCCCACCCCTACAAGC
TATGGAAGCAAGAGAGAGAACGCAGAGTGACCAACATCCTGGACCCCAGCCATCACATCCCTCCCCTGAG
AGAGAGGCTTTATGGTCGGGTTGCTCGGATCAAAGAGCTCTTCCAGAAGGAACAGCCGGCTGGAGAGAGG
ACACCCTTGCTTCTGTAG

Translation (565 aa):
MWRLRLLVLAVLAAGSAEAQANSSDGFLEFSVGKFTYFVLSKSSPQEAVLRHISSNVTFLLFQIHSQYQN
TTVSFTKTLLPSTSGTGNDRGLVFILRPEQAVCTWYLETGDTKPVQSVALTLSYSERDPIPGGCNLEFDL
DIDPNLYLDYNFFETTIKFAPANIGYARATEPPPCDVSTSRESRWRLRYDVYQYFLPEGDLTEASLLHHL
QRMAQVAQVKASAIKVATLTADDKTAVSFSSLPGQGVIYNVIVWDPSLNTSAAYVPVHTYACSFESVDGN
CAFPGRVSTKVFSTLVALLGLFVCFFGHRFWKTDLFFIGFIFLGFFFYILITRLTPLQYDVRLALTAVAG
SFGGLLLVASWWRFGILTLCMLCVGLVLGFLVSSGTFFTPLGNLNVFHDDGVFWVTFSCIALLVPVIFMG
CLRILNILACGVVGSYSVVLAVNSYMFTSLSYITLNVLRRALNTDFRGAVIRVPFQTNDYIILAVWGMLA
VSGITLQIRRERGQPPFPPHPYKLWKQERERRVTNILDPSHHIPPLRERLYGRVARIKELFQKEQPAGER
TPLLL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH