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Report for CCDS20696.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20696.1 Public Mus musculus 6 Rassf8 23 108 98 CCDS HistoryNCBI Gene:71323Re-query CCDS DB by CCDS ID:20696.1Re-query CCDS DB by GeneID:71323See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20696.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032388.4 ENSMUSP00000032388.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032388.4Link to Ensembl Protein Viewer:ENSMUSP00000032388.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032388Re-query CCDS DB by Protein ID:ENSMUSP00000032388
Original member Current member EBI ENSMUST00000111704.7 ENSMUSP00000107333.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111704.7Link to Ensembl Protein Viewer:ENSMUSP00000107333.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111704Re-query CCDS DB by Protein ID:ENSMUSP00000107333
Original member Current member NCBI NM_027760.3 NP_082036.1 Accepted alive Link to Nucleotide Sequence:NM_027760.3Link to Protein Sequence:NP_082036.1Re-query CCDS DB by Nucleotide ID:NM_027760Re-query CCDS DB by Protein ID:NP_082036Link to BLAST:NP_082036.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_082036.1 419 Q8CJ96 419 100% 0 0

Chromosomal Locations for CCDS 20696.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 145808460 145808562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145815053 145815942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145816498 145816642 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 145817067 145817188 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1260 nt):
ATGGAACTTAAAGTGTGGGTGGATGGCGTTCAGAGGATCGTCTGTGGCGTCACGGAAGTCACAACTTGCC
AGGAGGTTGTAATAGCCTTAGCCCAAGCTATAGGTCGAACTGGAAGGTACACCCTGATAGAGAAATGGAG
AGACACTGAGCGGCACTTGGCACCGCATGAAAACCCCATCGTGTCTTTGAACAAGTGGGGGCAGTATGCT
AGTGACGTGCAGCTCATCTTGCGTCGGACTGGGCCATCTCTCAGTGAGCGACCCACCTCGGACAGTGTGG
CCCGAATTCCTGAAAGAACTTTGTATCGACAGAGCCTTCCCCCCTTAGCCAAGCTCCGGCCTCAGGCGGA
CAAGTCCATCAGAAGGAGGGAGCCTAAGCGAAAGTCTCTCACCTTCACAGGGGGCGCCAAAGGGCTGACG
GACATTTTTGGAAAAGGCAAAGAGACTGAGTTCAGGCAGAAGGTGCTGAGTAACTGCAGGGCAACAGCAG
AGGAGCTGAAAAGGCTGATCCGGCTGCAGACGGGGAAGCTGCAGGCCATCGAGAAGCAGCTGGAGTCCAG
TGAGGCAGAGATCCGGTTCTGGGAGCAGAAGTACAGCTGTAGCCTGGAGGAGGAGATTGTCCGCCTGGAG
CAGAGGATCAAGAGAAACGACGTGGAGATCGAGGAGGAAGAGTTCTGGGAAAACGAATTACAGATCGAAC
AAGAGAACGAGAAGCAGCTGCAGGATCAGCTGGAGGAGATACGGCAGAAGGTGACAGACTGTGAAGGCAG
GCTGAAGGACTACCTGGCCCAGATCCACACCATGGAGAGCGGTCTCCAGGCAGAAAAACTGCACCGGGAA
GTTCAGGAGGCACAGGTCAATGAGGAGGAGGTGAAAGGAAAGATCGAAAAGGTCAAGGGGGAGATGGACC
TTCAAGGGCAGCAGAGCCTGAGGCTGGAGAACGGCATTAGAGCTGTGGAGAGGTCTCTGGGGCAGGCCAC
CAAGCGGCTACAGGACAAGGAGCAGGAGCTAGAGCAGTTGACCAAAGAGCTGCGGCAGGTCAACCTCCAG
CAGTTCATCCAGCAGACAGGGACCAAAGTCACCGTGCTGCCGGCCGAGCCCACGGAGATCGAGGCCTCGC
AGGCAGACATAGAGACAGAGGCGCCATTCCAGTCTGGGTCCCTGAAGCGACCTGGTTCATCCCGGCAGCT
CCCCAGTAATCTTCGTATTCTACAGAACCCTGTCTCCTCGGGTTTTAATCCTGAAGGCATCTATGTATAA

Translation (419 aa):
MELKVWVDGVQRIVCGVTEVTTCQEVVIALAQAIGRTGRYTLIEKWRDTERHLAPHENPIVSLNKWGQYA
SDVQLILRRTGPSLSERPTSDSVARIPERTLYRQSLPPLAKLRPQADKSIRRREPKRKSLTFTGGAKGLT
DIFGKGKETEFRQKVLSNCRATAEELKRLIRLQTGKLQAIEKQLESSEAEIRFWEQKYSCSLEEEIVRLE
QRIKRNDVEIEEEEFWENELQIEQENEKQLQDQLEEIRQKVTDCEGRLKDYLAQIHTMESGLQAEKLHRE
VQEAQVNEEEVKGKIEKVKGEMDLQGQQSLRLENGIRAVERSLGQATKRLQDKEQELEQLTKELRQVNLQ
QFIQQTGTKVTVLPAEPTEIEASQADIETEAPFQSGSLKRPGSSRQLPSNLRILQNPVSSGFNPEGIYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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