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Report for CCDS20678.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20678.1 Public Mus musculus 6 Slco1b2 23 108 98 CCDS HistoryNCBI Gene:28253Re-query CCDS DB by CCDS ID:20678.1Re-query CCDS DB by GeneID:28253See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20678.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000042812.8 ENSMUSP00000044326.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000042812.8Link to Ensembl Protein Viewer:ENSMUSP00000044326.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000042812Re-query CCDS DB by Protein ID:ENSMUSP00000044326
Original member Current member NCBI NM_020495.2 NP_065241.1 Accepted alive Link to Nucleotide Sequence:NM_020495.2Link to Protein Sequence:NP_065241.1Re-query CCDS DB by Nucleotide ID:NM_020495Re-query CCDS DB by Protein ID:NP_065241Link to BLAST:NP_065241.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_065241.1 689 Q9JJL3-1 689 100% 0 0

Chromosomal Locations for CCDS 20678.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 141634458 141634535 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141648489 141648630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141652443 141652575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141655306 141655418 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141656789 141656935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141657508 141657606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141663578 141663820 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141669326 141669490 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141671063 141671258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141672142 141672313 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141676204 141676385 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141681310 141681374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141683204 141683321 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 141685390 141685606 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2070 nt):
ATGGACCAAACTCAGCATCCAAGCAAAGCTGCCCAACCTTTAAGATCAGAGAAGACAAGGCACTGCGATG
GATTCAGGATATTTTTGGCAGCCCTCTCATTCAGCTACATATGCAAGGCACTAGGTGGAGTCATTATGAA
AAGTTCCATCACTCAAATAGAAAGAAGATTTGACATACCATCTTCCATTTCCGGTTTGATTGATGGAGGC
TTTGAAATTGGGAATTTGTTAGTTATTGTATTTGTGAGTTACTTTGGATCCAAGCTACACCGACCAAAGC
TGATTGGAACTGGTTGCTTCATCATGGGCATTGGGAGTATTCTGACTGCGTTGCCACATTTCTTCATGGG
ATATTACAGGTATGCAACAGAAAATGACATCAGTTCTCTACATAACTCCACGTTGACCTGTTTAGTCAAT
CAAACTACATCACTCACTGGAACCTCACCTGAGATAATGGAGAAAGGTTGTGAAAAGGGGTCCAACTCAT
ACACCTGGATTTATGTCTTGATGGGGAACATGCTTCGTGGGATAGGGGAAACCCCAATAGTGCCCCTAGG
AGTTTCCTACATTGATGACTTTGCAAAAGAAGGAAATTCTTCCATGTACTTAGGTACTCTGCATACTATA
GCAATGATCGGACCAATCCTTGGCTTTATCATGTCATCTGTGTTTGCTAAGCTATACGTAGACGTTGGAT
ATGTAGACCTGAGAAGTGTCCGCATAACTCCTCAGGATGCTCGTTGGGTTGGTGCCTGGTGGCTCGGCTT
CATTGTGAATGGACTACTATGCATCATTTGTTCTATACCCTTCTTTTTTCTACCCAAAATTCCAAAGAGA
TCACAGAAGGAAAGGAAAAATTCAGCATCTCTTCATGTACTCAAAACAGATGAAGACAAGAATCCCGTGA
CTAATCCAACAACACAAGAGAAACAAGCTCCTGCCAACCTGACTGGTTTTCTATGGTCTCTGAGAAGCAT
CCTTACCAATGAACAATATGTCATATTCTTGATACTGACGTTGCTACAAATCAGCAGCTTCATTGGATCC
TTCACTTACCTGTTCAAGTTTATAGAGCAGCAGTTTGGTCAGACAGCATCGCAGGCCAACTTTCTGTTAG
GAGTTATAACCATACCCACTATGGCAAGTGGAATGTTTTTAGGAGGATATCTCATTAAAAGATTAAAATT
AACCCTGCTTGGAATCACTAAGTTTGTGTTTTTCACCACAACAATGGCCTATGTGTTCTACCTGTCATAT
TTTCTTCTAATCTGTGAAAACAAGGCATTTGCTGGCCTAACCTTGACCTATGATGGAATGAACCCAGTGG
ACTCTCACATAGATGTCCCACTTTCTTATTGCAACTCGGACTGCATTTGTGATAAAAATCAATGGGAACC
TGTCTGTGGGGAAAATGGAGTGACTTACATTTCACCTTGTCTGGCAGGATGCAAATCATTTCGTGGTGAT
AAGAAACTGATGAATATAGAATTCTATGACTGCAGTTGTGTCAGCGGCTCTGGTTTCCAGAAGGGAAACC
ATTCAGCACGTTTGGGTGAATGCCCAAGAGACAAATGCAAAACCAAATATTACTTTTATATAACTTTTCA
AGTCATTATATCTTTTTTCACTGCACTGGGAAGCACTTCTCTTATGTTGATTCTGATAAGGAGTGTCCAA
CCTGAATTGAAATCACTTGGAATGGGATTCCATTCACTGGTTGTACGAACACTAGGAGGAATTCTAGCTC
CAGTCTATTATGGGGCATTAATTGACAGAACATGTATGAAGTGGTCTGTAACCAGCTGTGGAGCACGTGG
AGCATGCAGGCTATATAACTCGAGATTATTTGGAATGATCTACGTGGGTTTGAGTATAGCTTTAAAGACT
CCAATACTTCTTTTATATGTTGCATTAATTTATGTTATGAAGAGAAAAATGAAAAGAAATGATAACAAGA
TATTAGAAAATGGAAGAAAATTCACAGATGAAGGAAACCCAGAACCTGTAAATAATAATGGATACTCTTG
TGTACCTTCTGATGAAAAAAACAGTGAAACACCTCTTTAA

Translation (689 aa):
MDQTQHPSKAAQPLRSEKTRHCDGFRIFLAALSFSYICKALGGVIMKSSITQIERRFDIPSSISGLIDGG
FEIGNLLVIVFVSYFGSKLHRPKLIGTGCFIMGIGSILTALPHFFMGYYRYATENDISSLHNSTLTCLVN
QTTSLTGTSPEIMEKGCEKGSNSYTWIYVLMGNMLRGIGETPIVPLGVSYIDDFAKEGNSSMYLGTLHTI
AMIGPILGFIMSSVFAKLYVDVGYVDLRSVRITPQDARWVGAWWLGFIVNGLLCIICSIPFFFLPKIPKR
SQKERKNSASLHVLKTDEDKNPVTNPTTQEKQAPANLTGFLWSLRSILTNEQYVIFLILTLLQISSFIGS
FTYLFKFIEQQFGQTASQANFLLGVITIPTMASGMFLGGYLIKRLKLTLLGITKFVFFTTTMAYVFYLSY
FLLICENKAFAGLTLTYDGMNPVDSHIDVPLSYCNSDCICDKNQWEPVCGENGVTYISPCLAGCKSFRGD
KKLMNIEFYDCSCVSGSGFQKGNHSARLGECPRDKCKTKYYFYITFQVIISFFTALGSTSLMLILIRSVQ
PELKSLGMGFHSLVVRTLGGILAPVYYGALIDRTCMKWSVTSCGARGACRLYNSRLFGMIYVGLSIALKT
PILLLYVALIYVMKRKMKRNDNKILENGRKFTDEGNPEPVNNNGYSCVPSDEKNSETPL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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