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Report for CCDS20600.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20600.1 Public Mus musculus 6 Klra10 23 108 98 CCDS HistoryNCBI Gene:16628Re-query CCDS DB by CCDS ID:20600.1Re-query CCDS DB by GeneID:16628See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20600.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000112020.1 ENSMUSP00000107651.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112020.1Link to Ensembl Protein Viewer:ENSMUSP00000107651.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112020Re-query CCDS DB by Protein ID:ENSMUSP00000107651
Original member Current member NCBI NM_008459.2 NP_032485.2 Accepted alive Link to Nucleotide Sequence:NM_008459.2Link to Protein Sequence:NP_032485.2Re-query CCDS DB by Nucleotide ID:NM_008459Re-query CCDS DB by Protein ID:NP_032485Link to BLAST:NP_032485.2

Chromosomal Locations for CCDS 20600.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 130269210 130269345 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130272656 130272759 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130275749 130275888 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130279269 130279487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130280338 130280427 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 130281811 130281922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (801 nt):
ATGAGTGAGCTGGAGGTCACTTACTCAACTGTGAATCTTCATAAGTCTTCAGGGTTGCAGAAACTAGTAA
GGCATGAGGAGACTCAAGGGCCCAGAGAAGCTGGCAACAGAAAGTGTTCAATATACTGGCAACTCATTGT
GAAAGCTCTTGGAATCCTCTGTTTCCTTCTTCTGGTAATAGTTGCAGTGTTGGCAGTAAAGATTTTTCAG
TATAGTCAACACAAACAAGAAATCAATGAAACTCTCAACCACCACCATAACTGCAGCAACATGCAAAGGG
ATTTCAACTTAAAGGAAGAAATGTTGACAAATAAGTCTATAGATTGTAGGCCAAGCAATGAACTTCTGGA
ATACATCAAAAGAGAACAGGACAGATGGAATAGTGAAACCAATACTATTTTAGATTCCTCACGGGACACA
GGCGGAGGTGTTAAATACTGGTTCTGCTATAGTACTAAATGTTATTATTTCATCATGAACAAAACTACAT
GGAGTGGATGTAAAGCGAACTGCCAGCATTATAGCGTTCCCATTGTGAAGATAGAAGATGAAGATGAACT
GAAATTCCTTCAACGCCATGTTATTCCAGAGAGTTACTGGATTGGATTGTCTTATGACAAGAAAAAAAAG
GAATGGGCATGGATTGACAATGGCCCATCTAAACTTGACATGAAAATAAGGAAAATGAACTTTAAGTCTA
GAGGATGTGTATTTTTATCTAAAGCAAGAATAGAAGATACTGACTGTAATATTCCCTACTACTGTATTTG
TTGGAAGAAACTGGATAAATTCCCTGATTAA

Translation (266 aa):
MSELEVTYSTVNLHKSSGLQKLVRHEETQGPREAGNRKCSIYWQLIVKALGILCFLLLVIVAVLAVKIFQ
YSQHKQEINETLNHHHNCSNMQRDFNLKEEMLTNKSIDCRPSNELLEYIKREQDRWNSETNTILDSSRDT
GGGVKYWFCYSTKCYYFIMNKTTWSGCKANCQHYSVPIVKIEDEDELKFLQRHVIPESYWIGLSYDKKKK
EWAWIDNGPSKLDMKIRKMNFKSRGCVFLSKARIEDTDCNIPYYCICWKKLDKFPD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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