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Report for CCDS20584.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20584.1 Public Mus musculus 6 Clec12a 23 108 98 CCDS HistoryNCBI Gene:232413Re-query CCDS DB by CCDS ID:20584.1Re-query CCDS DB by GeneID:232413See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20584.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000065289.5 ENSMUSP00000063627.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000065289.5Link to Ensembl Protein Viewer:ENSMUSP00000063627.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000065289Re-query CCDS DB by Protein ID:ENSMUSP00000063627
Original member Current member NCBI NM_177686.4 NP_808354.1 Accepted alive Link to Nucleotide Sequence:NM_177686.4Link to Protein Sequence:NP_808354.1Re-query CCDS DB by Nucleotide ID:NM_177686Re-query CCDS DB by Protein ID:NP_808354Link to BLAST:NP_808354.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808354.1 267 Q504P2 267 99.6255% 0 1

Chromosomal Locations for CCDS 20584.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 129350421 129350511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129353352 129353450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129353647 129353835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129354477 129354628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129359408 129359511 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 129363894 129364062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (804 nt):
ATGTCTGAAGAAATTGTTTATGCAAATCTCAAAATCCAGGACCCTGATAAAAAAGAAGAAACCCAGAAGT
CTGACAAATGTGGGGGAAAAGTATCCGCCGATGCTTCCCATTCACAGCAAAAAACAGTCTTGATTCTGAT
TCTTCTATGCCTTCTGCTGTTCATTGGAATGGGGGTCTTAGGAGGCATCTTTTATACAACTTTGGCAACA
GAAATGATAAAATCGAATCAATTGCAAAGGGCCAAGGAAGAACTTCAGGAAAATGTTTCCCTACAGCTGA
AGCACAATCTCAACAGCTCCAAGAAAATCAAGAACCTTTCTGCCATGCTGCAAAGCACAGCCACCCAGCT
GTGCCGAGAGCTGTATAGCAAAGAACCAGAGCACAAATGTAAACCATGTCCAAAGGGTTCAGAATGGTAC
AAGGACAGCTGTTATTCTCAACTCAATCAGTATGGAACATGGCAAGAGAGTGTCATGGCCTGCTCTGCTC
GGAATGCCAGCCTCCTGAAGGTTAAGAACAAGGATGTGCTGGAATTTATAAAGTACAAGAAGCTACGCTA
TTTTTGGCTTGCATTGTTGCCCAGAAAAGATCGCACACAATATCCACTAAGTGAGAAGATGTTCCTCTCT
GAAGAGTCTGAAAGAAGCACAGATGACATAGATAAGAAGTACTGCGGATATATAGACAGGGTCAATGTTT
ATTATACATACTGCACTGATGAGAACAATATCATATGTGAAGAGACAGCCAGCAAGGTGCAGTTGGAAAG
TGTGTTGAATGGCCTCCCAGAGGATAGCAGGTAG

Translation (267 aa):
MSEEIVYANLKIQDPDKKEETQKSDKCGGKVSADASHSQQKTVLILILLCLLLFIGMGVLGGIFYTTLAT
EMIKSNQLQRAKEELQENVSLQLKHNLNSSKKIKNLSAMLQSTATQLCRELYSKEPEHKCKPCPKGSEWY
KDSCYSQLNQYGTWQESVMACSARNASLLKVKNKDVLEFIKYKKLRYFWLALLPRKDRTQYPLSEKMFLS
EESERSTDDIDKKYCGYIDRVNVYYTYCTDENNIICEETASKVQLESVLNGLPEDSR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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