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Report for CCDS20518.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20518.1 Public Mus musculus 6 Pex5 23 108 98 CCDS HistoryNCBI Gene:19305Re-query CCDS DB by CCDS ID:20518.1Re-query CCDS DB by GeneID:19305See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20518.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000080557.11 ENSMUSP00000079398.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000080557.11Link to Ensembl Protein Viewer:ENSMUSP00000079398.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000080557Re-query CCDS DB by Protein ID:ENSMUSP00000079398
Original member Current member EBI ENSMUST00000112531.7 ENSMUSP00000108150.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000112531.7Link to Ensembl Protein Viewer:ENSMUSP00000108150.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000112531Re-query CCDS DB by Protein ID:ENSMUSP00000108150
Original member NCBI NM_001277330.1 NP_001264259.1 Updated not alive Link to Nucleotide Sequence:NM_001277330.1Link to Protein Sequence:NP_001264259.1Re-query CCDS DB by Nucleotide ID:NM_001277330Re-query CCDS DB by Protein ID:NP_001264259
Current member NCBI NM_001277330.2 NP_001264259.1 Accepted alive Link to Nucleotide Sequence:NM_001277330.2Link to Protein Sequence:NP_001264259.1Re-query CCDS DB by Nucleotide ID:NM_001277330Re-query CCDS DB by Protein ID:NP_001264259Link to BLAST:NP_001264259.1
Original member NCBI NM_001360570.1 NP_001347499.1 Updated not alive Link to Nucleotide Sequence:NM_001360570.1Link to Protein Sequence:NP_001347499.1Re-query CCDS DB by Nucleotide ID:NM_001360570Re-query CCDS DB by Protein ID:NP_001347499
Current member NCBI NM_001360570.2 NP_001347499.1 Accepted alive Link to Nucleotide Sequence:NM_001360570.2Link to Protein Sequence:NP_001347499.1Re-query CCDS DB by Nucleotide ID:NM_001360570Re-query CCDS DB by Protein ID:NP_001347499Link to BLAST:NP_001347499.1
Original member NCBI NM_175933.2 NP_787947.1 Updated not alive Link to Nucleotide Sequence:NM_175933.2Link to Protein Sequence:NP_787947.1Re-query CCDS DB by Nucleotide ID:NM_175933Re-query CCDS DB by Protein ID:NP_787947
Current member NCBI NM_175933.3 NP_787947.1 Accepted alive Link to Nucleotide Sequence:NM_175933.3Link to Protein Sequence:NP_787947.1Re-query CCDS DB by Nucleotide ID:NM_175933Re-query CCDS DB by Protein ID:NP_787947Link to BLAST:NP_787947.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001264259.1 602 O09012-2 602 100% 0 0
NP_001347499.1 602 O09012-2 602 100% 0 0
NP_787947.1 602 O09012-2 602 100% 0 0

Chromosomal Locations for CCDS 20518.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 124397969 124398170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124398344 124398501 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124398781 124398946 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124399248 124399454 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124399859 124399929 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124400088 124400231 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124403116 124403235 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124403812 124403907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124404630 124404720 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124405167 124405272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124413269 124413400 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124413569 124413701 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124414007 124414042 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 124414287 124414433 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1809 nt):
ATGGCAATGCGGGAGCTGGTGGAGGGCGAATGTGGGGGTGCCAACCCGCTGATGAAGCTGGCCACCCATT
TCACCCAGGACAAGGCCCTTCGGCAGGAGGGACTGAGGCCTGGCCCCTGGCCTCCGGGAGCCTCAGCAGC
AGAGACCGTTTCCAAGCCTTTGGGAGTAGGAACTGAAGACGAGTTGGTGTCAGAATTCCTGCAGGACCAG
AATGCAACTCTTGTATCCCGAGCCCCTCAGACCTTCAAGATGGATGACCTCCTGGCAGAGATGCAGGAGA
TTGAACAGTCAAACTTTCGCCAGGCTCCTCAGAGAGCCCCTGGTGTGGCAGATTTGGCCTTGTCTGAGAA
TTGGGCCCAGGAGTTTCTTGCAGCTGGAGATGCTGTGGATGTAGCTCAAGATTATAATGAGACCGACTGG
TCCCAAGAATTCATCGCCGAAGTTACAGACCCACTGTCCGTGTCCCCTGCCCGATGGGCTGAGGAGTATC
TGGAGCAGTCTGAGGAGAAGCTGTGGTTGGGAGACCAGGAAGGATCCTCTACCGCTGATCGATGGTACGA
TGAATATCATCCTGAGGAGGACCTGCAGCACACAGCCAGTGACTTTGTGTCCAAGGTGGACGACCCCAAA
TTGGCTAACTCTGAGGGCACGTCAGAGGCCTGGGTTGATCAGTTTACAAGACCAGGAAACAAAATAGCTG
CCCTTCAGGTGGAATTTGAACGAGCCAAGTCAGCTATAGAGTCTGATGTCGATTTCTGGGACAAGTTACA
GGCAGAGTTGGAGGAGATGGCCAAGCGGGATGCCGAGGCGCACCCCTGGCTTTCTGACTATGATGACCTC
ACATCCGCTTCCTATGACAAGGGTTACCAGTTTGAGGAGGAGAATCCCTTGCGTGACCACCCTCAGCCTT
TTGAAGAAGGGCTGCATCGACTGGAGGAGGGAGACCTGCCCAATGCTGTGTTGCTCTTCGAGGCTGCTGT
GCAGCAGGATCCTAAGCACATGGAAGCTTGGCAGTACCTGGGCACCACCCAGGCCGAGAATGAGCAAGAG
CTCTTGGCTATCAGTGCCCTGCGGAGGTGTCTGGAACTAAAGCCAGATAACCGGACAGCACTGATGGCGC
TGGCTGTGAGCTTTACCAATGAGTCCCTGCAGCGCCAGGCCTGTGAGACGTTGAGGGACTGGCTGCGCTA
CTCACCGGCCTACGCTCATCTGGTGGCTCCTGGGGAAGAAGGGGCGACCGGGGCAGGCCCCAGCAAGCGC
ATCTTGGGATCTCTGTTGTCTGACTCCCTGTTTCTTGAAGTAAAAGATCTCTTCCTGGCGGCTGTGCGTC
TGGACCCTACATCCATTGACCCTGATGTGCAGTGTGGCCTGGGAGTCCTCTTCAACCTGAGCGGGGAGTA
CGACAAGGCTGTGGACTGTTTCACAGCTGCCCTCAGTGTTCGCCCCAATGACTATTTGATGTGGAACAAG
CTTGGGGCCACCCTGGCCAATGGGAACCAGAGTGAAGAAGCAGTGGCTGCATACCGCCGAGCCCTTGAAC
TACAGCCTGGGTATATTCGGTCCCGGTATAACCTAGGCATCAGCTGCATCAACCTGGGAGCTCACCGTGA
GGCTGTGGAGCACTTTCTGGAGGCTCTGAACATGCAGAGGAAGAGCCGGGGCCCTCGGGGTGAGGGGGGC
GCCATGTCTGAGAACATCTGGAGTACCCTGCGCTTGGCGTTATCCATGTTAGGCCAGAGCGATGCCTATG
GGGCAGCCGATGCTCGGGATCTGTCTGCCCTCCTAGCTATGTTTGGCCTGCCCCAGTGA

Translation (602 aa):
MAMRELVEGECGGANPLMKLATHFTQDKALRQEGLRPGPWPPGASAAETVSKPLGVGTEDELVSEFLQDQ
NATLVSRAPQTFKMDDLLAEMQEIEQSNFRQAPQRAPGVADLALSENWAQEFLAAGDAVDVAQDYNETDW
SQEFIAEVTDPLSVSPARWAEEYLEQSEEKLWLGDQEGSSTADRWYDEYHPEEDLQHTASDFVSKVDDPK
LANSEGTSEAWVDQFTRPGNKIAALQVEFERAKSAIESDVDFWDKLQAELEEMAKRDAEAHPWLSDYDDL
TSASYDKGYQFEEENPLRDHPQPFEEGLHRLEEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQE
LLAISALRRCLELKPDNRTALMALAVSFTNESLQRQACETLRDWLRYSPAYAHLVAPGEEGATGAGPSKR
ILGSLLSDSLFLEVKDLFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLMWNK
LGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG
AMSENIWSTLRLALSMLGQSDAYGAADARDLSALLAMFGLPQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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