CCDS Report for Consensus CDS

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Report for CCDS20487.1 (current version)

CCDS	Status	Species	Chrom.	Gene	CCDS Release	NCBI Annotation Release	Ensembl Annotation Release	Links
20487.1	Public	Mus musculus	6	Mical3	23	108	98

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20487.1

Original	Current	Source	Nucleotide ID	Protein ID	Status in CCDS	Seq. Status	Links
		EBI	ENSMUST00000077159.7	ENSMUSP00000076402.5	Accepted	alive
		NCBI	NM_153396.3	NP_700445.2	Accepted	alive

RefSeq	Length	Related UniProtKB/SwissProt	Length	Identity	Gaps	Mismatches
NP_700445.2	864	Q8CJ19-3	864	100%	0	0

Chromosomal Locations for CCDS 20487.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)

Genome Browser links:

Chromosome	Start	Stop
6	121007263	121007429
6	121008995	121009181
6	121021183	121021356
6	121022226	121022288
6	121022384	121022496
6	121024639	121024835
6	121026966	121027113
6	121029647	121029743
6	121030997	121031123
6	121033698	121033813
6	121034030	121034287
6	121036473	121036573
6	121037444	121037599
6	121038010	121038111
6	121038487	121038603
6	121040382	121040589
6	121041996	121042259

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.

Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2595 nt):
ATGGAGGAGAGGAAGCAGGAGACAACGAACCAAGCTCACGTCCTCTTTGACCGCTTTGTCCAGGCCACCA CCTGCAAGGGGACCCTCAGGGCCTTCCAAGAGCTCTGTGACCACCTGGAGCTGAAGCCCAAGGACTACCG GTCCTTCTACCACAAGCTCAAGTCCAAGCTCAACTACTGGAAGGCCAAAGCCCTCTGGGCCAAATTGGAC AAGCGGGGCAGTCACAAAGACTACAAAAAGGGCAAAGCCTGCACCAACACAAAGTGTCTCATCATTGGAG CTGGCCCCTGTGGGCTGCGCACAGCCATCGACTTGTCCTTGTTGGGAGCCAAGGTGGTTGTTATTGAAAA GCGAGATGCCTTCTCCCGCAACAATGTCTTACATCTCTGGCCCTTCACCATACACGATCTCCGAGGCCTG GGTGCCAAGAAATTCTACGGCAAGTTCTGTGCCGGAGCCATCGACCATATCAGTATCCGTCAGCTCCAGC TAATCCTCTTGAAGGTAGCCTTGATCTTGGGCATTGAGATCCATGTCAATGTGGAATTCCAAGGACTTGT TCAGCCTCCCGAGGACCAAGAGAATGAACGGATAGGATGGCGAGCATTGGTGCACCCCAAAACTCATCCT GTATCAGAATATGAATTTGAAGTTATCATCGGTGGAGATGGGCGTAGGAACACCTTGGAAGGATTTCGTC GAAAAGAATTTCGTGGCAAGCTAGCCATTGCCATTACAGCAAATTTTATCAACCGCAACACAACCGCAGA GGCCAAAGTGGAGGAGATTAGTGGCGTGGCTTTTATATTCAACCAAAAATTTTTCCAGGAGCTGAGAGAA GCCACAGGTATTGACTTAGAGAACATCGTCTACTACAAAGATGACACACACTACTTTGTCATGACGGCCA AAAAGCAGAGTTTGCTGGACAAGGGGGTGATCCTGCATGACTACACAGACACGGAGCTGTTGCTTTCCCG GGAGAACGTGGACCAGGAGGCCCTGCTGAACTATGCCCGGGAGGCCGCAGACTTCTCTACCCAGCAGCAG CTGCCTTCTCTGGATTTCGCCATCAATCACTACGGGCAGCCAGACGTGGCCATGTTTGACTTTACCTGCA TGTACGCCTCTGAAAATGCCGCCTTGGTCCGGGAACAGAACGGACACCAGTTACTAGTAGCTTTGGTTGG AGACAGCCTCCTGGAGCCTTTCTGGCCAATGGGGACAGGAATAGCCCGGGGCTTTCTGGCTGCTATGGAC TCTGCCTGGATGGTACGAAGCTGGTCTCTGGGCACCAGCCCCTTGGAAGTCCTGGCAGAAAGGGAAAGCA TTTATAGGTTGCTGCCTCAGACCACCCCTGAGAACGTGAGCAAAAACTTCAGCCAATATAGCATCGACCC TGTCACTAGGTATCCCAATATCAACATCAACTTCCTCAGGCCAAGCCAGGTGCGCCATTTATACGATAGC GGAGAAACAAAAGATATCCACCTGGAAATGGAGAACATGGTGAATCCCCGAACCACTCCCAAGCTGACTC GCAACGAGTCTGTAGCTCGTTCAAGCAAACTGCTGGGGTGGTGCCAAAGGCAGACAGAAGGCTATTCAGG AGTCAATGTGACAGATCTCACTATGTCTTGGAAAAGTGGCCTGGCCCTGTGTGCGATCATCCACAGATAC CGCCCCGATCTAATAGACTTTGATTCTTTGGATGAGCAAAACGTGGAGAAGAATAATCAGCTGGCCTTTG ACATCGCTGAGAAGGAACTGGGTATCTCTCCCATCATGACGGGCAAGGAGATGGCTTCGGTCGGGGAGCC AGACAAGCTGTCCATGGTGATGTACCTCACGCAGTTCTACGAGATGTTCAAGGACTCGCTCTCCTCCAGC GACACCCTCGACCTGAATGCAGAGGAGAAAGCCGTCCTGATAGCCAGCACCAAATCCCCCATCTCCTTCC TGAGCAAACTCGGACAGACCATCTCTCGGAAGCGTTCGCCCAAGGATAAAAAAGAAAAGGACTCAGATGG GGCTGGAAAGAGGAGAAAAACCAGTCAGTCAGAGGAGGAGGAGCCTCCCCGGAGCTACAAAGGAGAAAGA CCGACCCTGGTGAGCACCCTGACGGACAGACGGATGGATGCTGCCGTTGGGAACCAGAACAAAGTGAAGT ACATGGCGACCCAGCTGCTGGCCAAGTTTGAAGAGAACGCACCTGCTCAGTCCACTGGTGTGAGGAGACA GGGCTCCATAAAGAAAGAGTTCCCGCAGAACTTGGGGGGCAGCGACACGTGCTATTTCTGCCAAAAGCGG GTCTACGTGATGGAGAGGCTGAGCGCCGAGGGCAAGTTCTTCCATCGAAGCTGCTTCAAGTGTGAGTACT GTGCCACCACGCTGCGCCTATCAGCCTACGCCTACGACATCGAGGATGAGTTCTCTCCAAACTTCTGGAC ATCAGCCAGCTACCATGTTCCAGTTGCCCTTCCTGCTACGGTCATGCCTATGTGCCTTCTGTACCATCCA TCTCAAGTGCTCGTCTGCCTCGAGGGAGGCCCAGCATTCATGTCACCAGTGTTATTCAATGACACCAACA GTTGA
Translation (864 aa):
MEERKQETTNQAHVLFDRFVQATTCKGTLRAFQELCDHLELKPKDYRSFYHKLKSKLNYWKAKALWAKLD KRGSHKDYKKGKACTNTKCLIIGAGPCGLRTAIDLSLLGAKVVVIEKRDAFSRNNVLHLWPFTIHDLRGL GAKKFYGKFCAGAIDHISIRQLQLILLKVALILGIEIHVNVEFQGLVQPPEDQENERIGWRALVHPKTHP VSEYEFEVIIGGDGRRNTLEGFRRKEFRGKLAIAITANFINRNTTAEAKVEEISGVAFIFNQKFFQELRE ATGIDLENIVYYKDDTHYFVMTAKKQSLLDKGVILHDYTDTELLLSRENVDQEALLNYAREAADFSTQQQ LPSLDFAINHYGQPDVAMFDFTCMYASENAALVREQNGHQLLVALVGDSLLEPFWPMGTGIARGFLAAMD SAWMVRSWSLGTSPLEVLAERESIYRLLPQTTPENVSKNFSQYSIDPVTRYPNININFLRPSQVRHLYDS GETKDIHLEMENMVNPRTTPKLTRNESVARSSKLLGWCQRQTEGYSGVNVTDLTMSWKSGLALCAIIHRY RPDLIDFDSLDEQNVEKNNQLAFDIAEKELGISPIMTGKEMASVGEPDKLSMVMYLTQFYEMFKDSLSSS DTLDLNAEEKAVLIASTKSPISFLSKLGQTISRKRSPKDKKEKDSDGAGKRRKTSQSEEEEPPRSYKGER PTLVSTLTDRRMDAAVGNQNKVKYMATQLLAKFEENAPAQSTGVRRQGSIKKEFPQNLGGSDTCYFCQKR VYVMERLSAEGKFFHRSCFKCEYCATTLRLSAYAYDIEDEFSPNFWTSASYHVPVALPATVMPMCLLYHP SQVLVCLEGGPAFMSPVLFNDTNS

	Links Key
	Links to:	History report BLAST report Entrez Gene Nucleotide report Protein report
	Re-query CCDS DB by:	CCDS ID Gene ID Nucleotide ID Protein ID
	Genome Browser Links:	Ensembl Genome Browser NCBI Sequence Viewer UCSC Genome Browser VEGA Genome Browser

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