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Report for CCDS20476.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20476.1 Public Mus musculus 6 Erc1 23 108 98 CCDS HistoryNCBI Gene:111173Re-query CCDS DB by CCDS ID:20476.1Re-query CCDS DB by GeneID:111173See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20476.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000079582.4 ENSMUSP00000078534.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000079582.4Link to Ensembl Protein Viewer:ENSMUSP00000078534.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000079582Re-query CCDS DB by Protein ID:ENSMUSP00000078534
Original member Current member NCBI NM_178085.3 NP_835186.1 Accepted alive Link to Nucleotide Sequence:NM_178085.3Link to Protein Sequence:NP_835186.1Re-query CCDS DB by Nucleotide ID:NM_178085Re-query CCDS DB by Protein ID:NP_835186Link to BLAST:NP_835186.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_835186.1 368 Q99MI1-4 368 100% 0 0

Chromosomal Locations for CCDS 20476.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 119773659 119773901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119779477 119779632 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119783389 119783463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119796907 119797323 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 119824386 119824601 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1107 nt):
ATGGATCTGCAGACACAGCTGAAGGAAGTATTAAGAGAAAACGATCTTTTGAGGAAAGATGTGGAAGTAA
AGGAGAGCAAATTAAGTTCATCAATGAATAGTATCAAGACCTTCTGGAGCCCAGAGTTAAAGAAAGAGCG
GGCCTTGAGAAAAGATGAAGCTTCCAAAATCACCATTTGGAAGGAGCAGTACCGAGTTGTACAGGAGGAA
AACCAGCACATGCAGATGACAATCCAGGCTCTCCAGGATGAGCTGCGGATCCAGAGGGACTTGAATCAGC
TGTTTCAGCAAGATAGCAGCAGTAGGACTGGGGAGCCTTGCGTGGCAGAGCTCACAGAGGAGAACTTCCA
GAGGCTGCATGCTGAGCACGAGAGGCAAGCCAAAGAGCTGTTTCTTCTGCGGAAGACCCTGGAGGAAATG
GAGCTGAGGATTGAGACTCAGAAGCAGACCCTAAATGCTCGGGATGAGTCCATCAAGAAGCTTCTGGAGA
TGCTCCAGAGCAAAGGACTTTCTGCCAAAGCTACAGAGGAAGACCATGAGAGAACGCGACGGCTCGCAGA
GGCGGAGATGCACGTCCACCACCTCGAGAGTCTTTTGGAGCAGAAGGAAAAAGAGAATAATATGTTGAGA
GAGGAGATGCACCGGAGATTTGAAAATGCCCCTGATTCTGCCAAGACAAAAGCCTTGCAAACTGTTATTG
AAATGAAGGATTCAAAAATTTCTTCCATGGAGCGTGGGCTCCGAGACCTGGAAGAGGAAATTCAGATGCT
GAAGTCAAATGGGGCTTTGAGTAGTGAGGAGCGGGAGGAAGAGATGAAGCAAATGGAGGTGTACAGGAGC
CACTCAAAGTTTATGAAAAATAAGATTGGCCAGGTGAAACAGGAACTGTCCAGAAAGGACACAGAATTAC
TAGCCTTACAAACAAAGCTAGAAACTCTCACGAACCAATTCTCAGACAGTAAGCAACATATTGAGGTGCT
GAAAGAGTCCCTCACTGCTAAGGAGCAAAGGGCTGCCATCCTACAGACTGAGGTAAAGAGTTTTTGTGAT
TTGTGTAGAATCCAGTCCATACCTAGTTTCATTTTGTTATATATTTGTTATGTTTAG

Translation (368 aa):
MDLQTQLKEVLRENDLLRKDVEVKESKLSSSMNSIKTFWSPELKKERALRKDEASKITIWKEQYRVVQEE
NQHMQMTIQALQDELRIQRDLNQLFQQDSSSRTGEPCVAELTEENFQRLHAEHERQAKELFLLRKTLEEM
ELRIETQKQTLNARDESIKKLLEMLQSKGLSAKATEEDHERTRRLAEAEMHVHHLESLLEQKEKENNMLR
EEMHRRFENAPDSAKTKALQTVIEMKDSKISSMERGLRDLEEEIQMLKSNGALSSEEREEEMKQMEVYRS
HSKFMKNKIGQVKQELSRKDTELLALQTKLETLTNQFSDSKQHIEVLKESLTAKEQRAAILQTEVKSFCD
LCRIQSIPSFILLYICYV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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