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Report for CCDS20400.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20400.1 Public Mus musculus 6 Bhlhe40 23 108 98 CCDS HistoryNCBI Gene:20893Re-query CCDS DB by CCDS ID:20400.1Re-query CCDS DB by GeneID:20893See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20400.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032194.10 ENSMUSP00000032194.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032194.10Link to Ensembl Protein Viewer:ENSMUSP00000032194.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032194Re-query CCDS DB by Protein ID:ENSMUSP00000032194
Original member Current member NCBI NM_011498.4 NP_035628.1 Accepted alive Link to Nucleotide Sequence:NM_011498.4Link to Protein Sequence:NP_035628.1Re-query CCDS DB by Nucleotide ID:NM_011498Re-query CCDS DB by Protein ID:NP_035628Link to BLAST:NP_035628.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_035628.1 411 O35185 411 100% 0 0

Chromosomal Locations for CCDS 20400.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 108660913 108660992 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108661161 108661230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108661505 108661612 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108662521 108662644 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 108664479 108665332 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1236 nt):
ATGGAACGGATCCCCAGCGCGCAACCACCTCCTACCTGCCTGCCCAAAGCTCCAGGGCTGGAGCACGGAG
ACCTGTCAGGGATGGATTTTGCCCACATGTACCAAGTGTACAAGTCCAGGCGGGGAATAAAACGGAGCGA
AGACAGCAAGGAAACTTACAAACTGCCGCACCGGCTGATTGAGAAAAAGAGACGTGACCGGATTAACGAG
TGCATTGCCCAGCTGAAGGATCTCCTACCCGAACATCTCAAACTTACTACTTTGGGTCACTTGGAAAAAG
CAGTGGTTCTGGAGCTTACGTTGAAGCACGTGAAAGCATTGACAAATCTAATTGATCAGCAGCAGCAGAA
AATCATTGCCCTGCAGAGCGGTTTACAAGCTGGTGATTTGTCGGGAAGAAATCTCGAGGCAGGGCAAGAA
ATGTTCTGCTCAGGTTTCCAGACTTGTGCCCGTGAGGTACTTCAGTACCTGGCGAAGCATGAGAACACTC
GGGACCTGAAATCTTCCCAGCTCGTCACTCATCTCCATCGTGTGGTCTCGGAGCTGCTGCAGGGTGGTGC
TTCCAGGAAACCATTGGACTCGGCTCCCAAAGCCGTGGACTTGAAAGAGAAGCCCAGCTTCCTAGCCAAG
GGATCAGAAGGCCCTGGGAAAAACTGTGTGCCAGTCATCCAGCGGACTTTTGCTCCCTCGGGTGGGGAGC
AGAGCGGCAGTGACACGGACACAGACAGTGGCTATGGAGGTGAATTGGAGAAGGGGGACTTGCGCAGTGA
GCAGCCGTACTTCAAAAGCGACCATGGACGCAGGTTCGCCGTGGGAGAACGTGTCAGCACAATTAAGCAA
GAATCCGAAGAGCCCCCCACCAAAAAGAGCCGAATGCAGCTCTCAGAAGAGGAAGGCCACTTCGCGGGCA
GTGATCTGATGGGTTCCCCATTTCTTGGGCCACACCCACATCAGCCTCCTTTTTGCCTTCCCTTCTATCT
CATCCCACCATCGGCCACTGCCTACCTGCCTATGCTGGAGAAATGCTGGTACCCCACCTCTGTGCCAGTG
TTATACCCAGGCCTCAACACCTCAGCTGCAGCCCTCTCCAGCTTCATGAACCCAGACAAGATACCGACTC
CCTTGCTTCTGCCCCAGAGACTCCCTTCTCCTTTGGCACATTCGTCCCTCGACTCTTCGGCCTTGCTCCA
GGCTTTGAAGCAGATCCCTCCTTTAAACTTAGAAACCAAAGACTAA

Translation (411 aa):
MERIPSAQPPPTCLPKAPGLEHGDLSGMDFAHMYQVYKSRRGIKRSEDSKETYKLPHRLIEKKRRDRINE
CIAQLKDLLPEHLKLTTLGHLEKAVVLELTLKHVKALTNLIDQQQQKIIALQSGLQAGDLSGRNLEAGQE
MFCSGFQTCAREVLQYLAKHENTRDLKSSQLVTHLHRVVSELLQGGASRKPLDSAPKAVDLKEKPSFLAK
GSEGPGKNCVPVIQRTFAPSGGEQSGSDTDTDSGYGGELEKGDLRSEQPYFKSDHGRRFAVGERVSTIKQ
ESEEPPTKKSRMQLSEEEGHFAGSDLMGSPFLGPHPHQPPFCLPFYLIPPSATAYLPMLEKCWYPTSVPV
LYPGLNTSAAALSSFMNPDKIPTPLLLPQRLPSPLAHSSLDSSALLQALKQIPPLNLETKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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