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Report for CCDS20386.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20386.1 Public Mus musculus 6 Eif4e3 23 108 98 CCDS HistoryNCBI Gene:66892Re-query CCDS DB by CCDS ID:20386.1Re-query CCDS DB by GeneID:66892See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20386.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032151.2 ENSMUSP00000032151.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032151.2Link to Ensembl Protein Viewer:ENSMUSP00000032151.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000032151Re-query CCDS DB by Protein ID:ENSMUSP00000032151
Original member Current member NCBI NM_025829.4 NP_080105.1 Accepted alive Link to Nucleotide Sequence:NM_025829.4Link to Protein Sequence:NP_080105.1Re-query CCDS DB by Nucleotide ID:NM_025829Re-query CCDS DB by Protein ID:NP_080105Link to BLAST:NP_080105.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_080105.1 207 Q9DBB5 207 100% 0 0

Chromosomal Locations for CCDS 20386.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 99627007 99627053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99632257 99632412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99636109 99636175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99639163 99639223 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99640616 99640710 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99651719 99651791 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 99666628 99666752 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (624 nt):
ATGGCGCTGCCCCCGGCTGCCGCACCCCCCGGGGCTAACGAGCCTCTCGACAAGGCTCTGTCCGCGTTGC
CGCCGGAGCCGGGCGGTGTCCCGCTGCACTCGCCCTGGACCTTCTGGCTGGACAGATCACTCCCTGGTGC
CACAGCAGCCGAGTGTGCCTCGAATCTGAAGAAAATCTACACGGTACAAACAGTGCAGATATTCTGGAGT
GTATACAATAACATCCCTCCTGTGACCAGCCTGCCTTTGAGATGTAGTTATCACTTAATGAGAGGAGAGA
GGCGACCACTTTGGGAGGAGGAGAGTAATGCGAAGGGTGGCGTGTGGAAGATGAAAGTTCCCAAGGACAG
CACGTCCACAGTTTGGAAAGAATTGTTGTTAGCGACCATTGGAGAGCAGTTCACAGACTGTGCTGCAGCA
GATGACGAGATCATCGGAGTCAGCGTGAGTGTGCGGGACCGAGAGGATGTCGTCCAGGTGTGGAATGTCA
ACGCCTCACTAGTGGGCGAAGCGACTGTGCTAGAGAAGATCCACCAGCTCCTGCCCCACATAGCTTTTAA
AGCAGTGTTTTATAAACCCCATGAAGAGCATCATGCTTTTGAAGGTGGACGTGGAAAACACTAA

Translation (207 aa):
MALPPAAAPPGANEPLDKALSALPPEPGGVPLHSPWTFWLDRSLPGATAAECASNLKKIYTVQTVQIFWS
VYNNIPPVTSLPLRCSYHLMRGERRPLWEEESNAKGGVWKMKVPKDSTSTVWKELLLATIGEQFTDCAAA
DDEIIGVSVSVRDREDVVQVWNVNASLVGEATVLEKIHQLLPHIAFKAVFYKPHEEHHAFEGGRGKH


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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