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Report for CCDS20320.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20320.1 Public Mus musculus 6 Gkn3 23 108 98 CCDS HistoryNCBI Gene:68888Re-query CCDS DB by CCDS ID:20320.1Re-query CCDS DB by GeneID:68888See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 20320.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000032127.5 ENSMUSP00000032127.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000032127.5Link to Ensembl Protein Viewer:ENSMUSP00000032127.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000032127Re-query CCDS DB by Protein ID:ENSMUSP00000032127
Original member Current member NCBI NM_026860.1 NP_081136.1 Accepted alive Link to Nucleotide Sequence:NM_026860.1Link to Protein Sequence:NP_081136.1Re-query CCDS DB by Nucleotide ID:NM_026860Re-query CCDS DB by Protein ID:NP_081136Link to BLAST:NP_081136.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081136.1 191 Q9D0T7 191 100% 0 0

Chromosomal Locations for CCDS 20320.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 87383436 87383530 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87384335 87384476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87385467 87385574 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87387051 87387185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87387363 87387416 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 87388794 87388835 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (576 nt):
ATGCCGTTGCATTCGCTGGAGAGAGACAACATGAGACGCCTTATTGCGCCTTCCATTCTTGTGACTGTCT
TTCTAGTTCCAGCTCTGGCGCTGACGAACACTAGCGACAGTTATCCTCTGGATGGCTCTGTGGGGACCCA
GACCATCCATGTCGATGCCCTCAGAGGTGTGGTCAGCATCCGAGACAACAGCGTTCAGAGTGAATGGGAT
GGAGTCATGGACTACAAGAACGACCTCCTGGCAGCTAAGCTGTTTAGCAAGATGGCCTGTGTTCTGGCAA
AGATGGACCCAGCAGCCTTCCCAAGTTTGGATGATATTACCCAGGCCCTGGGCAAACAGGCTTCCGGTCA
CTACCCACCTACTCGAGGACTGACCTACACAGTTTTACCCAGCCGAATCAAAAACTTGGCCCAATACGGA
GTGCCAATCAAAGACCTGTGCAGAGCCGTCCCCACCTACTTTGCTCGGCAGCAAAAAGAAGGTACCGCCC
TGACGATGGACCCAGACTCATGTTCTGAGCTCCAGCTTCTGTCCTTCATGGGACTGTCCATTTGTGGTGA
GATCCCTGGGCTCTGA

Translation (191 aa):
MPLHSLERDNMRRLIAPSILVTVFLVPALALTNTSDSYPLDGSVGTQTIHVDALRGVVSIRDNSVQSEWD
GVMDYKNDLLAAKLFSKMACVLAKMDPAAFPSLDDITQALGKQASGHYPPTRGLTYTVLPSRIKNLAQYG
VPIKDLCRAVPTYFARQQKEGTALTMDPDSCSELQLLSFMGLSICGEIPGL


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
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