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Report for CCDS20313.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20313.1 Public Mus musculus 6 C87436 23 108 98 CCDS HistoryNCBI Gene:232196Re-query CCDS DB by CCDS ID:20313.1Re-query CCDS DB by GeneID:232196See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20313.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000050497.13 ENSMUSP00000057461.7 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000050497.13Link to Ensembl Protein Viewer:ENSMUSP00000057461.7Re-query CCDS DB by Nucleotide ID:ENSMUST00000050497Re-query CCDS DB by Protein ID:ENSMUSP00000057461
Original member Current member EBI ENSMUST00000113700.7 ENSMUSP00000109330.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000113700.7Link to Ensembl Protein Viewer:ENSMUSP00000109330.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000113700Re-query CCDS DB by Protein ID:ENSMUSP00000109330
Original member Current member NCBI NM_001243742.1 NP_001230671.1 Accepted alive Link to Nucleotide Sequence:NM_001243742.1Link to Protein Sequence:NP_001230671.1Re-query CCDS DB by Nucleotide ID:NM_001243742Re-query CCDS DB by Protein ID:NP_001230671Link to BLAST:NP_001230671.1
Original member Current member NCBI NM_001364555.1 NP_001351484.1 Accepted alive Link to Nucleotide Sequence:NM_001364555.1Link to Protein Sequence:NP_001351484.1Re-query CCDS DB by Nucleotide ID:NM_001364555Re-query CCDS DB by Protein ID:NP_001351484Link to BLAST:NP_001351484.1
Original member Current member NCBI NM_001364556.1 NP_001351485.1 Accepted alive Link to Nucleotide Sequence:NM_001364556.1Link to Protein Sequence:NP_001351485.1Re-query CCDS DB by Nucleotide ID:NM_001364556Re-query CCDS DB by Protein ID:NP_001351485Link to BLAST:NP_001351485.1
Original member Current member NCBI NM_001364557.1 NP_001351486.1 Accepted alive Link to Nucleotide Sequence:NM_001364557.1Link to Protein Sequence:NP_001351486.1Re-query CCDS DB by Nucleotide ID:NM_001364557Re-query CCDS DB by Protein ID:NP_001351486Link to BLAST:NP_001351486.1
Original member NCBI NM_146170.4 NP_666282.3 Updated not alive Link to Nucleotide Sequence:NM_146170.4Link to Protein Sequence:NP_666282.3Re-query CCDS DB by Nucleotide ID:NM_146170Re-query CCDS DB by Protein ID:NP_666282
Current member NCBI NM_146170.5 NP_666282.3 Accepted alive Link to Nucleotide Sequence:NM_146170.5Link to Protein Sequence:NP_666282.3Re-query CCDS DB by Nucleotide ID:NM_146170Re-query CCDS DB by Protein ID:NP_666282Link to BLAST:NP_666282.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001230671.1 574 Q8R3C1-1 574 100% 0 0
NP_001351484.1 574 Q8R3C1-1 574 100% 0 0
NP_001351485.1 574 Q8R3C1-1 574 100% 0 0
NP_001351486.1 574 Q8R3C1-1 574 100% 0 0
NP_666282.3 574 Q8R3C1-1 574 100% 0 0

Chromosomal Locations for CCDS 20313.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 86445446 86446268 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86447311 86447421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86449761 86449865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86453609 86453713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86457816 86457923 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86462581 86462681 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86465801 86465963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 86469746 86469954 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1725 nt):
ATGGAACCAAACTCTCAGAGGACTAAAGTCCCAGCTTTCTTATCTGACTTGGGGAAGGCCACACTGAGGG
GAATCAGGAAGTGTCCCCGATGTGGTACGTTCAATGGAACCCGTGGGTTGAGCTGTAAGAACAAGACATG
TGGAACCATATTTCGCTATGGTGCCCGAAAGCAGCCTAGCATTGAAGCTGTCAAAATCATCACCGGCTCT
GATCTACAGGTCTACTCTGTGCGACAGAGAGACCGAGGCCCCGACTACCGATGCTTCGTGGAGCTCGGTG
TTTCGGAGACTGCAATCCAGACCGTGGATGGTACAATCATCACTCAGCTGAGCTCCGGCCGATGTTACGT
CCCCTCGTGTTTGAAAGCTGCCACTCAAGGCATTGTGGAAAACCAGTGTCAACACATCAAGCTAGCGGTG
ACCTGCCAGGCGGAGGCCACCCCTCTGACCCTGAAGAGCTCAGTCCTGAATGCTCTGCAGGCTGCCCCAG
AAACCAAGCAGAGCCTCTGGCAGCTGGCCACCGAGCCCACGGGGCCCCTGGTACAGAGAGTCACTAAAAA
CATTATGGTGGTGAAATGCAAAGCCAGCCAGAAGCACAACTTGGGCTACTTGCACGCGTCCTTCATGCAG
AAGATCAGCTCCAGAAGCTTGCCGGAGCGCCGCTTCTTCTGCTCCTGCCAGACTCTGAGGCCACACAAGT
CCAGCGTCCCCAAGGCTGAGGCAGCCCCAAAGTGCATCCATTTCTTTGCTTGTCTCTGTGCCTTTGCCAG
CGATGAGACATTGGCTCAGGAGTTCTCGGACTTTCTGAACTTCGATGCCAGTGGTCTTAAGGAGATAATT
GTGCCCCATTTAGGCTGCCATGCAGAGTCATCTGTCTCAGCTTGTGAGTCTGCTGCCTCTAAGCCCCGGA
AGAGGAAGAAGGATGAAGTGTCTGGTGCACAGGTGAACAGCTCACTGATGCCGCAAGATGCAGTAAACAG
CAATCTAAGGAAGAGTGGCCTGAAAAGGCCTGTGGTTACGTCATCATTGAAAAGGCACGTCTGTGGTCAG
CTGTTAGATGAGGCACAAGTGACCCTGTCCTTCCAAGACTGGCTGGCCAGTGTCACAGAGCGCATCCATC
AAACCATGCACTATCAGTTTGATGGCAAACCAGAACCCCTGGTGTTCCACATTCCTCAGTCCTTTTTTGA
TGCCTTGCAACAGAGAATATCCATAGGAAGTGCAAAGAAGCGGCTCCCCAACTCCACTACAGCTTTTGTT
CGGAAAGATGCCTTGCCACTGGGAACCTTTTCCAAGTACACCTGGCATATCACCAATATTCTGCAAGTCA
AACAAATCTTAGACACCCCAGAGATGCCCCTGGAAATCACACGTAGCTTTATCCAGAACCGGGATGGAAC
TTACGAGCTGTTTAAATGCCCCAAAGTGGAAGTAGAGAACATAGCGGAAAGCTACGGCCGCATAGAGAAG
CAGCCTGTGCTGAGACCTTTGGAGCTGAAAACCTTCCTCAAAGTTGGTAACACTTCCCCAGATCAAAAGG
AGCCAACGCCCTTTATCATTGAGTGGATCCCAGATATCCTCCCACAGTCCAAGATTGGTGAGCTTCGAAT
CAAGTTTGAGTATGGTCACCACCGGAATGGACATGTGGCTGACTACCAGGACCCAAGGCCACCCATGGAC
CAACCTTTGGAGCTGGCCCCTCTGACTACTATCACTTTCCCTTGA

Translation (574 aa):
MEPNSQRTKVPAFLSDLGKATLRGIRKCPRCGTFNGTRGLSCKNKTCGTIFRYGARKQPSIEAVKIITGS
DLQVYSVRQRDRGPDYRCFVELGVSETAIQTVDGTIITQLSSGRCYVPSCLKAATQGIVENQCQHIKLAV
TCQAEATPLTLKSSVLNALQAAPETKQSLWQLATEPTGPLVQRVTKNIMVVKCKASQKHNLGYLHASFMQ
KISSRSLPERRFFCSCQTLRPHKSSVPKAEAAPKCIHFFACLCAFASDETLAQEFSDFLNFDASGLKEII
VPHLGCHAESSVSACESAASKPRKRKKDEVSGAQVNSSLMPQDAVNSNLRKSGLKRPVVTSSLKRHVCGQ
LLDEAQVTLSFQDWLASVTERIHQTMHYQFDGKPEPLVFHIPQSFFDALQQRISIGSAKKRLPNSTTAFV
RKDALPLGTFSKYTWHITNILQVKQILDTPEMPLEITRSFIQNRDGTYELFKCPKVEVENIAESYGRIEK
QPVLRPLELKTFLKVGNTSPDQKEPTPFIIEWIPDILPQSKIGELRIKFEYGHHRNGHVADYQDPRPPMD
QPLELAPLTTITFP


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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