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Report for CCDS2030.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2030.1 Public Homo sapiens 2 FAHD2B 24 110 108 CCDS HistoryNCBI Gene:151313Re-query CCDS DB by CCDS ID:2030.1Re-query CCDS DB by GeneID:151313See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2030.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272610.3 ENSP00000272610.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000272610.3Link to Ensembl Protein Viewer:ENSP00000272610.3Re-query CCDS DB by Nucleotide ID:ENST00000272610Re-query CCDS DB by Protein ID:ENSP00000272610
Original member Current member EBI ENST00000414820.6 ENSP00000410470.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000414820.6Link to Ensembl Protein Viewer:ENSP00000410470.2Re-query CCDS DB by Nucleotide ID:ENST00000414820Re-query CCDS DB by Protein ID:ENSP00000410470
Original member Current member NCBI NM_001320848.2 NP_001307777.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001320848.2Link to Protein Sequence:NP_001307777.1Re-query CCDS DB by Nucleotide ID:NM_001320848Re-query CCDS DB by Protein ID:NP_001307777Link to BLAST:NP_001307777.1
Original member Current member NCBI NM_199336.3 NP_955368.1 Accepted alive Link to Nucleotide Sequence:NM_199336.3Link to Protein Sequence:NP_955368.1Re-query CCDS DB by Nucleotide ID:NM_199336Re-query CCDS DB by Protein ID:NP_955368Link to BLAST:NP_955368.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001307777.1 314 Q6P2I3 314 100% 0 0
NP_955368.1 314 Q6P2I3 314 100% 0 0

Chromosomal Locations for CCDS 2030.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 97083755 97083817 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 97083948 97084035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 97084169 97084277 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 97085699 97085861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 97086139 97086198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 97090109 97090325 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 97091462 97091706 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (945 nt):
ATGCTGGTGTCTGGTAGAAGAAGATTACTCACAGCTCTGCTGCAGGCTCAGAAGTGGCCCTTTCAACCCT
CCAGAGACATGAGACTAGTGCAGTTCCGGGCACCCCACCTGGTGGGGCCTCACTTGGGCCTGGAGACAGG
GAATGGTGGAGGGGTTATCAACCTCAATGCCTTTGACCCCACACTCCCAAAGACGATGACGCAGTTCCTA
GAGCAGGGAGAGGCCACCCTCTCAGTGGCAAGAAGAGCCTTGGCTGCCCAGTTGCCAGTCCTACCATGGT
CGGAGGTAACCTTCCTGGCTCCAGTCACATGGCCAGATAAGGTGGTGTGTGTGGGCATGAATTATGTGGA
CCACTGCAAAGAACAGAACGTGCCCGTGCCCAAGGAGCCCATCATCTTCAGCAAGTTTGCCAGCTCCATC
GTGGGGCCCTATGATGAGGTGGTCCTCCCACCACAGAGCCAGGAGGTAGATTGGGAAGTGGAGCTGGCCG
TGGTCATTGGAAAGAAAGGCAAGCACATCAAGGCCACAGATGCCATGGCCCACGTGGCCGGCTTCACTGT
GGCTCATGACGTGAGTGCTCGTGACTGGCTAACAAGACGCAATGGGAAACAGTGGCTGCTGGGAAAAACC
TTCGACACCTTCTGCCCTCTGGGCCCTGCCTTGGTGACCAAGGACAGTGTAGCAGATCCACACAACTTAA
AGATCTGCTGCCGAGTGAATGGGGAAGTCGTCCAGAGCAGCAACACCAACCAGATGGTATTCAAGACAGA
GGACCTGATAGCCTGGGTCTCCCAGTTTGTTACCTTTTACCCAGGGGATGTCATCCTAACTGGGACCCCC
CCAGGTGTCGGTGTATTCAGGAAACCTCCTGTCTTTCTCAAGAAGGGGGATGAAGTCCAGTGTGAGATTG
AAGAACTAGGTGTCATCATCAACAAGGTGGTGTGA

Translation (314 aa):
MLVSGRRRLLTALLQAQKWPFQPSRDMRLVQFRAPHLVGPHLGLETGNGGGVINLNAFDPTLPKTMTQFL
EQGEATLSVARRALAAQLPVLPWSEVTFLAPVTWPDKVVCVGMNYVDHCKEQNVPVPKEPIIFSKFASSI
VGPYDEVVLPPQSQEVDWEVELAVVIGKKGKHIKATDAMAHVAGFTVAHDVSARDWLTRRNGKQWLLGKT
FDTFCPLGPALVTKDSVADPHNLKICCRVNGEVVQSSNTNQMVFKTEDLIAWVSQFVTFYPGDVILTGTP
PGVGVFRKPPVFLKKGDEVQCEIEELGVIINKVV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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