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Report for CCDS20283.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20283.1 Public Mus musculus 6 Atp6v1b1 23 108 98 CCDS HistoryNCBI Gene:110935Re-query CCDS DB by CCDS ID:20283.1Re-query CCDS DB by GeneID:110935See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20283.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000006431.7 ENSMUSP00000006431.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000006431.7Link to Ensembl Protein Viewer:ENSMUSP00000006431.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000006431Re-query CCDS DB by Protein ID:ENSMUSP00000006431
Original member Current member NCBI NM_134157.3 NP_598918.1 Accepted alive Link to Nucleotide Sequence:NM_134157.3Link to Protein Sequence:NP_598918.1Re-query CCDS DB by Nucleotide ID:NM_134157Re-query CCDS DB by Protein ID:NP_598918Link to BLAST:NP_598918.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_598918.1 513 Q91YH6 513 100% 0 0

Chromosomal Locations for CCDS 20283.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 83743085 83743202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83749854 83749909 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83752107 83752205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83752383 83752476 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83752850 83752927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83753767 83753906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83754725 83754826 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83755387 83755484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83756188 83756311 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83756553 83756703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83756849 83756931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83757851 83757955 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83758115 83758244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 83758330 83758493 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1542 nt):
ATGGCCACAACAGTAGACAGCAGGTCCTCGGGATTCACTGGCAATAGCTGTGACCCAGGCACAGCCCAAG
AGCATGTGCAGGCTGTGACCCGAAACTACATCACCCACCCCCGAGTCACCTATAGGACAGTGTGCAGCGT
CAATGGGCCTCTGGTGGTGCTGGACCAGGTCAAGTTTGCCCAGTATGCTGAGATTGTCAACTTTACCCTC
CCTGATGGTACTCAGAGGAGTGGCCAGGTGCTTGAAGTGGCTGGGACCAAGGCCATTGTTCAGGTGTTTG
AAGGGACTTCAGGGATTGATTCCCAGAAGACCACATGTGAATTCACAGGGGACATCCTGCGGACTCCTGT
GTCAGAAGACATGCTGGGTCGGATTTTCAATGGCTCTGGCAAACCCATTGACAAAGGACCTGCTGTCATG
GCAGAGGAGTTTCTGGACATCAATGGCCAGCCAATCAATCCCCATGACCGAATCTACCCCGAGGAGATGA
TCCAGACGGGAATCTCCCCCATTGATGTCATGAACAGCATCGCTCGTGGCCAGAAGATCCCCATCTTCTC
TGCGGCTGGGCTCCCCCACAATGAGATTGCAGCCCAGATCTGCCGCCAAGCCGGGCTGGTGAAGAAATCC
AAGGCTGTGCTGGATTATCATGAAGACAACTTCGCCATTGTCTTTGCAGCCATGGGGGTGAACATGGAGA
CAGCCAGGTTCTTCAAGTCAGATTTCGAGCAGAATGGAACCATGGGAAATGTCTGTCTCTTCCTGAATTT
GGCCAATGACCCTACGATTGAGCGGATCATCACGCCACGTCTGGCACTGACCACGGCTGAGTTCCTTGCC
TACCAGTGTGAGAAGCACGTGCTGGTGATACTGACTGACATGAGCTCCTATGCGGAGGCCTTGCGGGAGG
TCTCAGCTGCCCGGGAGGAAGTGCCAGGACGCCGTGGCTTTCCTGGATATATGTACACAGACTTGGCCAC
CATCTATGAGCGAGCTGGCCGTGTGGAGGGCCGGGGTGGTTCCATCACCCAGATCCCCATTCTCACCATG
CCTAATGATGATATCACCCATCCCATCCCAGACTTGACTGGCTTCATCACAGAGGGGCAGATTTATGTGG
ACCGACAGCTACATAACCGGCAGGTCTACCCACCCATCAATGTGCTCCCATCCCTCTCGCGACTGATGAA
GTCGGCCATAGGCGAGGGCATGACCAGAAAGGACCACGGAGATGTCTCCAACCAGCTGTACGCCTGCTAC
GCCATCGGGAAGGACGTGCAGGCCATGAAAGCGGTGGTGGGGGAGGAGGCGCTCACCTCCGAGGACCTGC
TCTACCTGGAGTTCCTGCAGAAGTTTGAGAAGAATTTCATCACCCAAGGTCCTTACGAGAACCGCACGGT
GTTCGAGTCGCTGGACCTGGGCTGGAAACTGCTGCGCATCTTTCCGAAAGAGATGCTGAAGCGCATTCCG
CAGAGCATGACGGACGAGTTCTACTCTCGCCAGGGGGCGCAGCAGGACCCCGCATCCGACACGGCGCTCT
AA

Translation (513 aa):
MATTVDSRSSGFTGNSCDPGTAQEHVQAVTRNYITHPRVTYRTVCSVNGPLVVLDQVKFAQYAEIVNFTL
PDGTQRSGQVLEVAGTKAIVQVFEGTSGIDSQKTTCEFTGDILRTPVSEDMLGRIFNGSGKPIDKGPAVM
AEEFLDINGQPINPHDRIYPEEMIQTGISPIDVMNSIARGQKIPIFSAAGLPHNEIAAQICRQAGLVKKS
KAVLDYHEDNFAIVFAAMGVNMETARFFKSDFEQNGTMGNVCLFLNLANDPTIERIITPRLALTTAEFLA
YQCEKHVLVILTDMSSYAEALREVSAAREEVPGRRGFPGYMYTDLATIYERAGRVEGRGGSITQIPILTM
PNDDITHPIPDLTGFITEGQIYVDRQLHNRQVYPPINVLPSLSRLMKSAIGEGMTRKDHGDVSNQLYACY
AIGKDVQAMKAVVGEEALTSEDLLYLEFLQKFEKNFITQGPYENRTVFESLDLGWKLLRIFPKEMLKRIP
QSMTDEFYSRQGAQQDPASDTAL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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