NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS2017.2 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2017.2 Public Homo sapiens 2 STARD7 24 110 108 CCDS HistoryNCBI Gene:56910Re-query CCDS DB by CCDS ID:2017.2Re-query CCDS DB by GeneID:56910See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq, Havana and CCDS collaboration)

Sequence IDs included in CCDS 2017.2

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337288.10 ENSP00000338030.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000337288.10Link to Ensembl Protein Viewer:ENSP00000338030.5Re-query CCDS DB by Nucleotide ID:ENST00000337288Re-query CCDS DB by Protein ID:ENSP00000338030
Original member Current member NCBI NM_020151.4 NP_064536.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_020151.4Link to Protein Sequence:NP_064536.2Re-query CCDS DB by Nucleotide ID:NM_020151Re-query CCDS DB by Protein ID:NP_064536Link to BLAST:NP_064536.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_064536.2 370 Q9NQZ5 370 100% 0 0

Chromosomal Locations for CCDS 2017.2

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 96186730 96186914 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96187217 96187301 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96192369 96192468 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96193078 96193160 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96193242 96193352 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96194958 96195007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96195341 96195549 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 96208145 96208434 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1113 nt):
ATGCTCCCGCGGAGGCTGCTGGCCGCCTGGCTGGCGGGGACGCGGGGCGGGGGCCTGCTGGCGCTTCTGG
CCAATCAGTGCCGCTTCGTCACGGGCCTGCGCGTGCGGCGCGCGCAGCAGATCGCGCAGCTCTACGGCCG
CCTCTACTCCGAGAGCTCACGCCGCGTTCTCCTCGGCCGCCTCTGGCGCCGGCTGCACGGCCGTCCTGGC
CATGCCTCTGCCTTGATGGCGGCGTTAGCCGGCGTCTTCGTTTGGGACGAGGAGAGGATCCAGGAGGAGG
AGTTGCAGAGATCTATTAATGAGATGAAGCGGTTGGAAGAAATGTCAAATATGTTTCAGAGCTCTGGAGT
CCAGCACCACCCTCCAGAACCAAAAGCCCAAACAGAAGGGAATGAAGATTCAGAGGGCAAAGAGCAACGT
TGGGAAATGGTGATGGATAAGAAACACTTTAAGCTGTGGCGGCGCCCAATTACAGGCACCCACCTTTACC
AGTACCGAGTTTTTGGAACCTACACAGATGTGACACCTCGGCAGTTCTTCAATGTTCAGCTGGACACAGA
GTATAGAAAAAAATGGGATGCCCTGGTAATCAAGCTGGAGGTGATTGAGAGGGATGTGGTTAGTGGTTCC
GAGGTTCTTCACTGGGTAACCCATTTTCCTTATCCAATGTACTCACGGGATTATGTTTATGTTCGGCGGT
ATAGTGTGGATCAGGAAAACAACATGATGGTGTTGGTGTCGCGTGCTGTGGAGCATCCGAGTGTGCCAGA
GTCTCCAGAATTCGTCAGGGTCAGATCATATGAATCCCAAATGGTTATCCGTCCCCACAAGTCATTTGAT
GAGAATGGCTTTGACTACTTACTAACATACAGTGACAATCCCCAAACGGTGTTTCCTCGCTACTGTGTTA
GTTGGATGGTTTCCAGTGGCATGCCAGATTTCCTGGAGAAGCTGCACATGGCCACTCTGAAAGCCAAGAA
TATGGAGATTAAAGTAAAGGACTACATCTCAGCTAAGCCTCTGGAAATGAGTAGTGAAGCCAAGGCCACC
AGCCAGTCCTCTGAGCGAAAGAACGAGGGCAGCTGTGGCCCTGCTCGGATTGAGTATGCTTGA

Translation (370 aa):
MLPRRLLAAWLAGTRGGGLLALLANQCRFVTGLRVRRAQQIAQLYGRLYSESSRRVLLGRLWRRLHGRPG
HASALMAALAGVFVWDEERIQEEELQRSINEMKRLEEMSNMFQSSGVQHHPPEPKAQTEGNEDSEGKEQR
WEMVMDKKHFKLWRRPITGTHLYQYRVFGTYTDVTPRQFFNVQLDTEYRKKWDALVIKLEVIERDVVSGS
EVLHWVTHFPYPMYSRDYVYVRRYSVDQENNMMVLVSRAVEHPSVPESPEFVRVRSYESQMVIRPHKSFD
ENGFDYLLTYSDNPQTVFPRYCVSWMVSSGMPDFLEKLHMATLKAKNMEIKVKDYISAKPLEMSSEAKAT
SQSSERKNEGSCGPARIEYA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH