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Report for CCDS20102.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
20102.1 Public Mus musculus 6 Krba1 23 108 98 CCDS HistoryNCBI Gene:77827Re-query CCDS DB by CCDS ID:20102.1Re-query CCDS DB by GeneID:77827See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 20102.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000077093.6 ENSMUSP00000076345.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000077093.6Link to Ensembl Protein Viewer:ENSMUSP00000076345.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000077093Re-query CCDS DB by Protein ID:ENSMUSP00000076345
Original member Current member EBI ENSMUST00000114571.7 ENSMUSP00000110218.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000114571.7Link to Ensembl Protein Viewer:ENSMUSP00000110218.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000114571Re-query CCDS DB by Protein ID:ENSMUSP00000110218
Original member Current member NCBI NM_001362144.1 NP_001349073.1 Accepted alive Link to Nucleotide Sequence:NM_001362144.1Link to Protein Sequence:NP_001349073.1Re-query CCDS DB by Nucleotide ID:NM_001362144Re-query CCDS DB by Protein ID:NP_001349073Link to BLAST:NP_001349073.1
Original member Current member NCBI NM_133922.3 NP_598683.3 Accepted alive Link to Nucleotide Sequence:NM_133922.3Link to Protein Sequence:NP_598683.3Re-query CCDS DB by Nucleotide ID:NM_133922Re-query CCDS DB by Protein ID:NP_598683Link to BLAST:NP_598683.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001349073.1 1043 Q6NXZ1-1 1043 100% 0 0
NP_598683.3 1043 Q6NXZ1-1 1043 100% 0 0

Chromosomal Locations for CCDS 20102.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 48402977 48403010 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403378 48403497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48403991 48404140 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48405234 48405389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406297 48406431 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48406834 48407007 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48407673 48407822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48408529 48408726 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409170 48409343 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48409718 48409894 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48411642 48411794 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48412274 48412426 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413078 48413272 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48413363 48413503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414056 48414151 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48414490 48414600 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 48415576 48416390 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3132 nt):
ATGCGGGAAAACTACGAGACGTTGGTGTCTGTGGGGACCTCTGAGCTGCTTCCTCTCTCTGCTTTCCTGT
CACCTGCAGAGGCTGGAGGAGCCACATCAGGAGAGAGCCACCAGGATAAGGGACAAAAACCCCATTTGGA
GCATAGTTCCCAGGGAGAGCAGCCTCAGCAGAGCCTACACCTCACCGCATTAGTGCAGCTGGTGAAGGAG
ATTCCAGAGTTCTTGTTTGGAGAAGTGAAGGGTACTGAGGACTACTCCGAGAGTGGGAGCACCAGTCTGG
ATGGGGAGCAAACAAGCCCCGAGGTAGCTGTGGTTGTGGAAGCTTGCCCTCCCCGAGGCCTGCTCAATTC
TCTTCCGGAGAGCCCTGCAAGCCACCCCAGCCTGGCCACCACACCCACAGGCAGCTCAACTTCCGGTGGC
CCTCCTGGAGACTGGGCACACGGAAGCCCCTTACCTGCTATAGGAACTGATGATAAGCCATTATCTATAG
AGAAGGAAGGTGTAGGAGCCTCGAGAGAGACCTCCATTCATTCCACTCAAAGCCTGGGCCAGAGCAAGAG
TTACCTAAGACAGGAGCGAGGCAGCATGGGAACAGGAACCCTTCCTGAGAACAGCCCATTGCAAGGCCTC
ATCAACTGTTTGAAGGAGATCCTTGTGCCCAGACCCCAGCACCGGGGGACAGCCCCAGACTTGCCGCCTT
CTCTCCCTGGCTTGAGTGTGTTGAAGCAGACGAGAGCTGAGGTAGAGGCTGGGAGCCTGCCCTGCCCGGT
GAAGACAGAGGCAGCATCCGGAGATTGTCCCCTTCAGGGCCTGCTGAACTGTCTGAAGGAGATCCCAAAA
GCTCCAGACCGACGTCCCAGCCCCTCAGGAGCATCAGACTTGCAGCTGCAGGAGGACCCAGGGAAAAGAC
ATTCTGGAGGGATGAGACACCTCCAGACTCCTCCCCACCCTAGTCATGAAGCTGGCAGTATGCTTGCCAC
GGTGAAGGTAGAAGATGGCTGGGCCCAGAGTCCCCCAGTGCCAGCATCCTGCCAGCTTAGCAGGCAAGGC
TATAGCTCCTATTCCACTGGAGACAACAGAGAGGTCCGTGTGCCCCGCTGGGGCCCCATGACTCTAGCCA
GCAGGGCCTCAAGCTCACCCCTAGAAGCTCTGGAGGCCTGTCTGAAGGGCATCCCTCCAGGTGGGTCATC
ACCTCTTCAGTCACTAGCCATCTCATGGTCCAGAAGTCCTCAGCTAGGAGATGCCGGGTCTCAGAGGTTT
GAGCTACAGCAACAAGGATCTCACAGTGAAGAAGCTACAAGGGAGCCACTTCTGCCTCTGAGCTTGCAGG
GCTACATGAGAGAAGGACCTGGGGTTCAACCCTGTGGCTCCCAGGGTACCCCTACCAGCTTCTCCTCAGC
CAGCAGCAGTGATGGGGATCTGGATTTCAGGAGCCCCAGGAGCAGCCAGGGGCAACGGCTTGGGAAAGGC
TATCTACCAGGAAACTCTCCACTCCAAGGCCTGGAGAACTGCCTGAGAGAGATCCCTATTCCCAGGCCAC
AGGCTGCCTGGCCATGCTCCTCGGCTGTCAACAGGGGATTGAAGAGAACAGAGCCCAGGAACTGGACTGG
AGACAGAGAAGGACTGAGAGGTGAGGCCTCTGAGCCACCCCACCTCAGACAGCGTCCTGGAGAAGTGCCC
AGCAGGAGTCTGCATCAAGACAGTCCACAGACCTGTACTTCCACCTGCCACCAAGTGACCACCAGGCCAG
GAACATGGCAATGGCCACAAGAGGAGACAGCCACCATGCCCTCCCCTCTGCACCGCCTGGAGAACTCTCT
GAGGGGGATCTTGCCTGTGAGGCCCTTGCGTTTCACCTGCGTGACTGGCCCTGGCCCCAGTCCCAGCCCT
TGCTCCAGCTCCAGCTTCAGCAGCTCTGATGGAGAAGACCTAAGACCAGAGCCTGCATTTTGGCAGTCAC
CCCTCCAGCAGAAAGACCAGCCTCCCTCCTGTAAGGACCCTGTTCGTCTGTGCCCTGTCTCTGGCGCATC
TCCAAGAGTCAACAGCAATAGCTGTTCTGCGGAAGACCGTGAGAGAACAGAGCCCAGGGACTGCAGCAGC
CTCAGCGCAGGAAGAGCAGAAGAGAAGCCCCACCCACCCAGAAGAGAAGATGGTGCAGAGCGCACACGCC
AGCCTGGGCCTGTCACCAATGCTGAAGGAAAAGGAGCAGCAGCTGGCCACCCATCGCCTGCCCCTCAGCT
GGAGGAAAAGCCTGAGCCCAAGGGTACTGAAGACTCCAGGGACCTGGAGCCTGGACATAGACCACCCAGT
GCCGCAGCCAGGACCCAAGGGAAGCTGCTCTCTGGAGACCCTCCGGAGTCACCTAGCAAGTCTCCCCTTC
CCACAACTGTCTTGTCAAAATGGTCACCCACTTCTCTTCAGCCACCATGCCCCTGTGGCAGGTCCTTGCA
GCAGGAGCTGCATAACCTTGGTACTGCCCTCACGGACAAGCTAGACCGGCTTGCAGCAGCCTTGGCAGGC
CTGACTCAGGAAGTTGCAACCATGAAGACCCAAATGGATCAACTGCGAAGGCACCCACGGAGCCTTGGCC
CAAAAGGTCAGGGTTCCTGGCAGTTGGCCCTCCCCCAGAGACCTCGCTGGGTCAACAGACTGGGCCACAG
ACATCTACCCTACTGGAGACAGAAGGGCCCCACCAGGCCCAGACCAAAGATTCTGCGGACCCAGGCAGAA
GGCTGCAAGACTAGTGACCGCCCAGGACTCTCTAGAGGGAAGGGCAGTTTGGTGCCTCAGCTGCCTCCAG
AGGCTTCCTTGGTAGAATCTTCCAGGCCCACCTGTAGTTCATCCCAGCAGATCTCCTCTACGCCTGGAGG
CCACACTGTGCTGACTGCACACCCTCCTCTGGAGCACACTGCATGCCACCAGAATCCCCTCTCCCCTTCA
GTGCCTACTTCAGTGCAGGTCCCCCTTGTGGCCTCACCTGCAACCAGTGCAGACACAGAACCTCCGGCTG
CTAGAGTGGCAGCCATCAGCATTCCAAACCAGCCCAAGGAACCTGACAGCCTGCTAGGGGAAGCCCTCAG
CAGAGACCTCTGGGGAGGTGACCACCGGGACCCAAGGTGGGGGGCCCATTAA

Translation (1043 aa):
MRENYETLVSVGTSELLPLSAFLSPAEAGGATSGESHQDKGQKPHLEHSSQGEQPQQSLHLTALVQLVKE
IPEFLFGEVKGTEDYSESGSTSLDGEQTSPEVAVVVEACPPRGLLNSLPESPASHPSLATTPTGSSTSGG
PPGDWAHGSPLPAIGTDDKPLSIEKEGVGASRETSIHSTQSLGQSKSYLRQERGSMGTGTLPENSPLQGL
INCLKEILVPRPQHRGTAPDLPPSLPGLSVLKQTRAEVEAGSLPCPVKTEAASGDCPLQGLLNCLKEIPK
APDRRPSPSGASDLQLQEDPGKRHSGGMRHLQTPPHPSHEAGSMLATVKVEDGWAQSPPVPASCQLSRQG
YSSYSTGDNREVRVPRWGPMTLASRASSSPLEALEACLKGIPPGGSSPLQSLAISWSRSPQLGDAGSQRF
ELQQQGSHSEEATREPLLPLSLQGYMREGPGVQPCGSQGTPTSFSSASSSDGDLDFRSPRSSQGQRLGKG
YLPGNSPLQGLENCLREIPIPRPQAAWPCSSAVNRGLKRTEPRNWTGDREGLRGEASEPPHLRQRPGEVP
SRSLHQDSPQTCTSTCHQVTTRPGTWQWPQEETATMPSPLHRLENSLRGILPVRPLRFTCVTGPGPSPSP
CSSSSFSSSDGEDLRPEPAFWQSPLQQKDQPPSCKDPVRLCPVSGASPRVNSNSCSAEDRERTEPRDCSS
LSAGRAEEKPHPPRREDGAERTRQPGPVTNAEGKGAAAGHPSPAPQLEEKPEPKGTEDSRDLEPGHRPPS
AAARTQGKLLSGDPPESPSKSPLPTTVLSKWSPTSLQPPCPCGRSLQQELHNLGTALTDKLDRLAAALAG
LTQEVATMKTQMDQLRRHPRSLGPKGQGSWQLALPQRPRWVNRLGHRHLPYWRQKGPTRPRPKILRTQAE
GCKTSDRPGLSRGKGSLVPQLPPEASLVESSRPTCSSSQQISSTPGGHTVLTAHPPLEHTACHQNPLSPS
VPTSVQVPLVASPATSADTEPPAARVAAISIPNQPKEPDSLLGEALSRDLWGGDHRDPRWGAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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