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Report for CCDS2003.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
2003.1 Public Homo sapiens 2 SPMIP9 24 110 108 CCDS HistoryNCBI Gene:200523Re-query CCDS DB by CCDS ID:2003.1Re-query CCDS DB by GeneID:200523See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 2003.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000303254.4 ENSP00000307142.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000303254.4Link to Ensembl Protein Viewer:ENSP00000307142.3Re-query CCDS DB by Nucleotide ID:ENST00000303254Re-query CCDS DB by Protein ID:ENSP00000307142
Original member Current member NCBI NM_152670.3 NP_689883.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152670.3Link to Protein Sequence:NP_689883.1Re-query CCDS DB by Nucleotide ID:NM_152670Re-query CCDS DB by Protein ID:NP_689883Link to BLAST:NP_689883.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689883.1 180 Q96LM6 180 100% 0 0

Chromosomal Locations for CCDS 2003.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 88525645 88525671 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88526405 88526497 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 88529052 88529474 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (543 nt):
ATGGCAGGTGTGAAATACCCGGGACAGGACCCTGTGGATTTAGACATATACCAAAGCTCCCACATGGTCG
ACTATCAGCCCTACAGGAAGCACAAATACTCCAGGGTCACGCCGCAAGAGCAGGCAAAGCTCGATGCTCA
ACTCCGGGACAAAGAGTTTTACAGGCCCATCCCTAACCCCAACCCCAAGCTAACAGATGGGTACCCTGCT
TTCAAAAGACCCCACATGACTGCCAAAGACCTGGGACTCCCCGGCTTCTTCCCATCACAGGAACATGAGG
CCACGAGGGAGGACGAGCGCAAGTTCACCAGCACCTGCCATTTCACATATCCAGCTTCCCACGATCTGCA
CCTGGCCCAGGGTGACCCCAACCAGGTCCTCCAGAGTGCTGACTTTCCGTGCCTCGTGGATCCCAAACAC
CAGCCTGCTGCAGAGATGGCCAAAGGCTACCTGCTACTGCCAGGGTGTCCCTGTCTTCATTGCCATATAG
TCAAGGTCCCCATCTTGAACCGGTGGGGACCCTTGATGCCATTTTACCAGTAG

Translation (180 aa):
MAGVKYPGQDPVDLDIYQSSHMVDYQPYRKHKYSRVTPQEQAKLDAQLRDKEFYRPIPNPNPKLTDGYPA
FKRPHMTAKDLGLPGFFPSQEHEATREDERKFTSTCHFTYPASHDLHLAQGDPNQVLQSADFPCLVDPKH
QPAAEMAKGYLLLPGCPCLHCHIVKVPILNRWGPLMPFYQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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