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Report for CCDS1999.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1999.1 Public Homo sapiens 2 PLGLB2 24 110 108 CCDS HistoryNCBI Gene:5342Re-query CCDS DB by CCDS ID:1999.1Re-query CCDS DB by GeneID:5342See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1999.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000359481.9 ENSP00000352458.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000359481.9Link to Ensembl Protein Viewer:ENSP00000352458.4Re-query CCDS DB by Nucleotide ID:ENST00000359481Re-query CCDS DB by Protein ID:ENSP00000352458
Original member Current member EBI ENST00000410086.3 ENSP00000386317.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000410086.3Link to Ensembl Protein Viewer:ENSP00000386317.3Re-query CCDS DB by Nucleotide ID:ENST00000410086Re-query CCDS DB by Protein ID:ENSP00000386317
Original member Current member NCBI NM_002665.4 NP_002656.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002665.4Link to Protein Sequence:NP_002656.1Re-query CCDS DB by Nucleotide ID:NM_002665Re-query CCDS DB by Protein ID:NP_002656Link to BLAST:NP_002656.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002656.1 96 Q02325 96 100% 0 0

Chromosomal Locations for CCDS 1999.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 87748154 87748202 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87752247 87752382 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 87753528 87753633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (291 nt):
ATGGAACATAAGGAAGTGGTTCTTCTACTTCTTTTATTTCTGAAATCAGGTCAAGGAGAGCCCCTGGATG
ACTATGTGAATACCCAGGGGCCTTCACTGTTCAGTGTCACTAAGAAGCAGCTGGGGGCAGGAAGCAGAGA
AGAATGTGCAGCAAAATGTGAAGAGGACAAAGAATTCACCTGCAGGGCATTCCAATATCACAGTAAAGAG
CAACAATGTGTGATAATGGCTGAAAACAGGAAGTCCTCCATAATCATTAGGATGAGAGATGCAGTTTTAT
TTGAAAAGTAA

Translation (96 aa):
MEHKEVVLLLLLFLKSGQGEPLDDYVNTQGPSLFSVTKKQLGAGSREECAAKCEEDKEFTCRAFQYHSKE
QQCVIMAENRKSSIIIRMRDAVLFEK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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