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Report for CCDS19971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19971.1 Public Mus musculus 6 Klhdc10 23 108 98 CCDS HistoryNCBI Gene:76788Re-query CCDS DB by CCDS ID:19971.1Re-query CCDS DB by GeneID:76788See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19971.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000068259.9 ENSMUSP00000069669.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000068259.9Link to Ensembl Protein Viewer:ENSMUSP00000069669.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000068259Re-query CCDS DB by Protein ID:ENSMUSP00000069669
Original member Current member NCBI NM_029742.3 NP_084018.1 Accepted alive Link to Nucleotide Sequence:NM_029742.3Link to Protein Sequence:NP_084018.1Re-query CCDS DB by Nucleotide ID:NM_029742Re-query CCDS DB by Protein ID:NP_084018Link to BLAST:NP_084018.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_084018.1 439 Q6PAR0-1 439 100% 0 0

Chromosomal Locations for CCDS 19971.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 6 (NC_000072.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 30401994 30402150 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30427709 30427795 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30439644 30439865 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30441777 30441931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30444427 30444575 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30446618 30446702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30447411 30447477 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30447941 30447988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30449491 30449630 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 30450487 30450696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1320 nt):
ATGTCGGCTGCCCAGGGCTGGGACCGGAACCGCCGGCGGGGAGGAGGCGCGGCCGGCGGGGCCAGCGGGG
TTAGCGGGGCCGGCGCGGCCGGCGGGGGTCGGGGCACCGGACAGCTCAACCGATTCGTGCAGCTCTCGGG
ACGGCCGCACCTGCCAGGTAAGAAGAAAATACGGTGGGACCCAGTTAGGAGGCGCTTCATTCAGTCCTGT
CCCATCATAAGGATCCCTAACAGGTTCTTGAGAGGCCACAGACCTCCCCCAGCCCGCAGTGGACACCGTT
GTGTGGCAGACAATACCAATCTCTATGTGTTTGGAGGGTATAACCCAGACTATGATGAATCGGGAGGGCC
GGATAACGAAGACTACCCTCTCTTCAGGGAGCTTTGGCGGTATCATTTTGCAACAGGCGTGTGGCACCAG
ATGGGTACAGATGGCTACATGCCCCGGGAATTGGCATCAATGTCACTTGTGCTGCATGGAAACAACCTGT
TAGTGTTCGGAGGTACAGGCATCCCGTTTGGTGAGAGCAACGGCAATGACGTCCATGTCTGCAATGTGAA
GTACAAGAGATGGGCTCTACTCAGCTGTCGGGGGAAGAGGCCCAGCCGTATATACGGACAGGCCATGGCC
CTCATCAATGGGTCCCTTTATGTCTTTGGGGGAACAACCGGCTACATCTATAGCACAGACCTGCACAAGT
TAGATCTCAACACCATGGTGTGGACACAACTCAAACCAAACAACCTGTCCTGTGACCTGCCGGAGGAGAG
GTACAGACATGAAATTGCTCATGACGGGCAGAGGATTTACATCTTGGGAGGAGGTACTTCCTGGACAGCC
TATTCCTTAAACAAGATCCATGCATACAACCTTGAAACAAATGCATGGGAGGAGATCGCAACAAAACCTC
ATGAAAAAATAGGTTTTCCTGCAGCCCGACGATGTCACAGTTGTGTTCAAATTAAAAATGATGTCTTCAT
TTGTGGGGGCTATAATGGAGAAGTGATCCTGGGAGACATCTGGAAGCTGAATCTGCAGACGTTTCAGTGG
GTGAAGCTCCCTGCCACCATGCCAGAGCCCGTTTACTTTCACTGTGCGGCTGTCACTCCTGCTGGTTGCA
TGTACATCCACGGAGGAGTGGTGAACATCCATGAAAACAAACGGACTGGGTCGCTGTTTAAGATCTGGCT
GGTGGTACCTAGCCTGCTGGAACTGGCATGGGAGAAGCTGCTCGCGGCCTTCCCCAACCTAGCAAACCTC
TCCCGAACACAGCTCCTGCACCTTGGACTCACACAGGAACTCATCGAGCGTTTGAAATGA

Translation (439 aa):
MSAAQGWDRNRRRGGGAAGGASGVSGAGAAGGGRGTGQLNRFVQLSGRPHLPGKKKIRWDPVRRRFIQSC
PIIRIPNRFLRGHRPPPARSGHRCVADNTNLYVFGGYNPDYDESGGPDNEDYPLFRELWRYHFATGVWHQ
MGTDGYMPRELASMSLVLHGNNLLVFGGTGIPFGESNGNDVHVCNVKYKRWALLSCRGKRPSRIYGQAMA
LINGSLYVFGGTTGYIYSTDLHKLDLNTMVWTQLKPNNLSCDLPEERYRHEIAHDGQRIYILGGGTSWTA
YSLNKIHAYNLETNAWEEIATKPHEKIGFPAARRCHSCVQIKNDVFICGGYNGEVILGDIWKLNLQTFQW
VKLPATMPEPVYFHCAAVTPAGCMYIHGGVVNIHENKRTGSLFKIWLVVPSLLELAWEKLLAAFPNLANL
SRTQLLHLGLTQELIERLK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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