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Report for CCDS198.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
198.1 Public Homo sapiens 1 TMCO4 24 110 108 CCDS HistoryNCBI Gene:255104Re-query CCDS DB by CCDS ID:198.1Re-query CCDS DB by GeneID:255104See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 198.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000294543.11 ENSP00000294543.6 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000294543.11Link to Ensembl Protein Viewer:ENSP00000294543.6Re-query CCDS DB by Nucleotide ID:ENST00000294543Re-query CCDS DB by Protein ID:ENSP00000294543
Original member Current member NCBI NM_001349112.3 NP_001336041.1 Accepted alive Link to Nucleotide Sequence:NM_001349112.3Link to Protein Sequence:NP_001336041.1Re-query CCDS DB by Nucleotide ID:NM_001349112Re-query CCDS DB by Protein ID:NP_001336041Link to BLAST:NP_001336041.1
Original member Current member NCBI NM_001349113.3 NP_001336042.1 Accepted alive Link to Nucleotide Sequence:NM_001349113.3Link to Protein Sequence:NP_001336042.1Re-query CCDS DB by Nucleotide ID:NM_001349113Re-query CCDS DB by Protein ID:NP_001336042Link to BLAST:NP_001336042.1
Original member Current member NCBI NM_001349114.3 NP_001336043.1 Accepted alive Link to Nucleotide Sequence:NM_001349114.3Link to Protein Sequence:NP_001336043.1Re-query CCDS DB by Nucleotide ID:NM_001349114Re-query CCDS DB by Protein ID:NP_001336043Link to BLAST:NP_001336043.1
Original member Current member NCBI NM_181719.7 NP_859070.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_181719.7Link to Protein Sequence:NP_859070.3Re-query CCDS DB by Nucleotide ID:NM_181719Re-query CCDS DB by Protein ID:NP_859070Link to BLAST:NP_859070.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001336041.1 634 Q5TGY1-1 634 100% 0 0
NP_001336042.1 634 Q5TGY1-1 634 100% 0 0
NP_001336043.1 634 Q5TGY1-1 634 100% 0 0
NP_859070.3 634 Q5TGY1-1 634 100% 0 0

Chromosomal Locations for CCDS 198.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 19683040 19683444 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19694434 19694551 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19700768 19700885 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19737372 19737456 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19739824 19739960 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19740777 19740941 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19745532 19745651 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19746456 19746599 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19747163 19747260 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19755634 19755766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19770542 19770569 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19771308 19771482 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 19780580 19780758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1905 nt):
ATGGCCATGTGGAACAGGCCATGCCAGAGGCTGCCTCAGCAGCCTCTGGTAGCTGAGCCCACTGCAGAGG
GGGAGCCACACCTGCCCACGGGCCGGGAGCTGACTGAGGCCAACCGCTTCGCCTATGCTGCCCTCTGTGG
CATCTCCCTGTCCCAGTTATTTCCTGAACCCGAACACAGCTCCTTCTGCACAGAGTTCATGGCAGGCCTG
GTGCAGTGGCTGGAGTTGTCTGAAGCTGTCTTGCCAACCATGACTGCTTTTGCGAGCGGCCTGGGAGGTG
AAGGAGCAGATGTGTTTGTTCAAATTTTACTGAAGGACCCCATCTTGAAGGACGACCCGACGGTGATCAC
TCAGGACCTTCTGAGCTTCTCACTCAAGGATGGGCACTATGACGCCCGGGCCAGAGTCCTCGTTTGCCAC
ATGACCTCCCTGCTCCAAGTGCCCTTGGAGGAGCTGGATGTCCTTGAAGAGATGTTCCTGGAGAGCCTGA
AGGAAATCAAAGAAGAGGAATCTGAAATGGCCGAGGCATCCCGAAAGAAGAAAGAAAACCGGAGGAAATG
GAAGCGTTATCTCCTGATAGGCCTGGCGACTGTCGGAGGCGGAACGGTGATCGGTGTGACTGGAGGTCTA
GCTGCACCCCTTGTTGCCGCTGGAGCAGCGACGATTATTGGCAGCGCCGGGGCAGCGGCTCTGGGCTCAG
CAGCCGGCATAGCCATCATGACCTCGCTGTTTGGTGCAGCTGGAGCTGGCCTGACAGGATACAAGATGAA
GAAGCGAGTGGGAGCCATTGAAGAGTTCACGTTTCTGCCTCTGACGGAGGGCAGGCAGCTGCACATCACC
ATCGCCGTCACGGGGTGGCTCGCTTCTGGCAAATACCGCACCTTCAGTGCCCCGTGGGCTGCCCTGGCCC
ACAGCCGTGAGCAGTACTGCCTGGCCTGGGAAGCCAAGTACCTGATGGAGCTCGGCAATGCCCTGGAGAC
CATCCTCAGTGGTCTCGCCAACATGGTGGCCCAGGAGGCCCTAAAGTACACAGTGTTGTCTGGCATTGTG
GCTGCCCTGACCTGGCCAGCCTCACTCCTCAGTGTCGCCAATGTCATCGACAACCCCTGGGGGGTGTGTC
TCCATCGATCAGCAGAGGTTGGCAAGCACCTGGCCCACATCCTGCTCTCCCGGCAGCAGGGGCGACGACC
TGTCACCTTGATTGGCTTCAGCCTGGGAGCCAGAGTCATCTACTTCTGTCTGCAGGAGATGGCTCAAGAG
AAAGATTGCCAAGGAATCATCGAGGACGTCATCCTGCTGGGTGCGCCTGTGGAGGGAGAAGCCAAGCATT
GGGAGCCTTTCCGGAAGGTGGTGTCCGGGAGGATCATCAACGGCTACTGCAGGGGAGACTGGCTGCTGAG
TTTCGTGTACCGCACATCCTCGGTGCAGCTCCGTGTCGCCGGCCTACAGCCCGTGCTGCTGCAGGACAGG
AGGGTGGAGAACGTGGACCTGACCTCTGTGGTCAGCGGCCACCTGGACTATGCCAAGCAGATGGATGCCA
TCCTGAAGGCCGTGGGCATCCGCACCAAGCCAGGCTGGGACGAGAAGGGGCTCTTGCTGGCCCCAGGCTG
CCTGCCCTCCGAGGAGCCTCGCCAGGCAGCAGCTGCCGCCTCATCAGGCGAGACCCCCCACCAGGTTGGG
CAAACCCAGGGTCCCATATCCGGAGACACCTCCAAATTGGCCATGTCCACAGACCCCAGCCAAGCCCAGG
TGCCAGTAGGGCTGGACCAGTCTGAAGGGGCCTCCCTTCCTGCTGCTGCCAGCCCTGAAAGGCCCCCCAT
CTGCAGCCATGGCATGGACCCCAACCCACTGGGCTGCCCCGATTGTGCCTGCAAGACCCAGGGCCCCAGC
ACGGGGCTGGACTGA

Translation (634 aa):
MAMWNRPCQRLPQQPLVAEPTAEGEPHLPTGRELTEANRFAYAALCGISLSQLFPEPEHSSFCTEFMAGL
VQWLELSEAVLPTMTAFASGLGGEGADVFVQILLKDPILKDDPTVITQDLLSFSLKDGHYDARARVLVCH
MTSLLQVPLEELDVLEEMFLESLKEIKEEESEMAEASRKKKENRRKWKRYLLIGLATVGGGTVIGVTGGL
AAPLVAAGAATIIGSAGAAALGSAAGIAIMTSLFGAAGAGLTGYKMKKRVGAIEEFTFLPLTEGRQLHIT
IAVTGWLASGKYRTFSAPWAALAHSREQYCLAWEAKYLMELGNALETILSGLANMVAQEALKYTVLSGIV
AALTWPASLLSVANVIDNPWGVCLHRSAEVGKHLAHILLSRQQGRRPVTLIGFSLGARVIYFCLQEMAQE
KDCQGIIEDVILLGAPVEGEAKHWEPFRKVVSGRIINGYCRGDWLLSFVYRTSSVQLRVAGLQPVLLQDR
RVENVDLTSVVSGHLDYAKQMDAILKAVGIRTKPGWDEKGLLLAPGCLPSEEPRQAAAAASSGETPHQVG
QTQGPISGDTSKLAMSTDPSQAQVPVGLDQSEGASLPAAASPERPPICSHGMDPNPLGCPDCACKTQGPS
TGLD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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