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Report for CCDS1971.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1971.1 Public Homo sapiens 2 TCF7L1 24 110 108 CCDS HistoryNCBI Gene:83439Re-query CCDS DB by CCDS ID:1971.1Re-query CCDS DB by GeneID:83439See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1971.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000282111.4 ENSP00000282111.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000282111.4Link to Ensembl Protein Viewer:ENSP00000282111.3Re-query CCDS DB by Nucleotide ID:ENST00000282111Re-query CCDS DB by Protein ID:ENSP00000282111
Original member Current member NCBI NM_031283.3 NP_112573.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_031283.3Link to Protein Sequence:NP_112573.1Re-query CCDS DB by Nucleotide ID:NM_031283Re-query CCDS DB by Protein ID:NP_112573Link to BLAST:NP_112573.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_112573.1 588 Q9HCS4 588 100% 0 0

Chromosomal Locations for CCDS 1971.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 85133685 85133933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85134016 85134079 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85134323 85134450 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85283495 85283578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85302484 85302616 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85303895 85303997 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85304255 85304338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85305260 85305403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85306206 85306365 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85306452 85306559 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85307642 85307717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 85309029 85309462 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1767 nt):
ATGCCCCAGCTCGGCGGCGGGGGCGGCGGCGGCGGCGGCGGCAGCGGGGGAGGCGGCGGCTCCAGCGCCG
GGGCGGCCGGCGGAGGGGACGACCTCGGGGCGAACGACGAGCTGATCCCCTTCCAGGACGAGGGGGGCGA
GGAGCAGGAGCCGAGCAGCGATAGCGCCTCGGCGCAGCGGGACCTAGACGAGGTCAAGTCGTCCCTGGTC
AACGAGTCGGAGAACCAGAGCAGCAGCTCGGACTCGGAGGCGGAGAGGCGCCCGCAGCCCGTCCGGGACA
CTTTCCAGAAGCCGCGGGACTATTTCGCCGAAGTGAGAAGGCCTCAGGACAGCGCGTTCTTTAAAGGACC
CCCGTACCCTGGGTACCCCTTCCTGATGATCCCGGACCTGAGCAGCCCGTACCTCTCCAACGGACCCCTG
TCTCCCGGAGGAGCGCGCACCTACCTGCAGATGAAATGGCCCCTCCTCGATGTCCCCTCCAGCGCCACAG
TCAAGGACACGAGGTCACCATCTCCAGCACACTTGTCTAATAAAGTTCCTGTCGTTCAGCACCCGCATCA
CATGCATCCGCTGACTCCCCTCATCACCTACAGCAATGACCACTTCTCCCCCGGCTCCCCTCCCACCCAC
CTCTCCCCAGAGATCGATCCAAAGACAGGAATCCCCCGGCCCCCTCACCCATCCGAGCTGTCACCGTATT
ACCCACTCTCTCCCGGAGCTGTCGGACAAATCCCCCACCCCCTCGGCTGGCTCGTCCCACAGCAAGGCCA
GCCCATGTACTCCCTTCCTCCCGGTGGCTTCCGGCACCCTTACCCCGCCCTCGCCATGAACGCCTCGATG
TCCAGCCTGGTCTCCAGTCGGTTCTCTCCTCACATGGTGGCTCCTGCCCACCCTGGCCTGCCCACCTCAG
GGATCCCCCACCCTGCCATCGTCTCCCCCATCGTCAAGCAGGAACCGGCACCCCCCAGCCTGAGCCCTGC
AGTGAGCGTGAAATCACCAGTCACCGTGAAAAAGGAGGAGGAAAAGAAGCCCCACGTGAAGAAGCCTCTG
AATGCCTTCATGTTGTATATGAAGGAGATGAGGGCCAAGGTGGTGGCTGAGTGCACCCTGAAGGAAAGTG
CAGCCATTAACCAGATCCTTGGAAGAAAGTGGCACAACCTGTCTCGAGAAGAACAGGCCAAGTACTACGA
GCTGGCCCGGAAGGAGCGGCAGCTTCACTCGCAGCTCTACCCAACCTGGTCAGCCCGGGACAACTATGGT
AAGAAAAAGAAGAGGAAGAGAGAAAAGCAGCTGTCCCAGACACAGTCACAGCAGCAAGTCCAGGAGGCAG
AGGGTGCCCTGGCCTCCAAGAGCAAGAAGCCATGTGTTCAGTACCTGCCCCCCGAGAAGCCCTGTGACAG
CCCTGCCTCCTCCCACGGGAGCATGCTGGACTCCCCGGCCACTCCCTCTGCAGCTTTGGCCTCACCAGCT
GCCCCTGCTGCCACCCATTCGGAGCAAGCCCAGCCCCTCTCCCTCACCACCAAACCAGAAACCCGGGCCC
AGCTGGCTCTCCACTCTGCCGCCTTCCTGTCGGCTAAGGCTGCAGCCTCCTCCTCTGGGCAGATGGGCAG
CCAGCCTCCCCTCCTGTCCCGGCCCCTCCCCCTTGGGTCCATGCCCACAGCTCTGCTGGCCTCTCCCCCG
TCCTTCCCCGCCACGCTCCATGCCCACCAGGCCCTCCCGGTGCTACAGGCCCAGCCTCTTTCCCTGGTCA
CCAAGTCTGCCCACTAA

Translation (588 aa):
MPQLGGGGGGGGGGSGGGGGSSAGAAGGGDDLGANDELIPFQDEGGEEQEPSSDSASAQRDLDEVKSSLV
NESENQSSSSDSEAERRPQPVRDTFQKPRDYFAEVRRPQDSAFFKGPPYPGYPFLMIPDLSSPYLSNGPL
SPGGARTYLQMKWPLLDVPSSATVKDTRSPSPAHLSNKVPVVQHPHHMHPLTPLITYSNDHFSPGSPPTH
LSPEIDPKTGIPRPPHPSELSPYYPLSPGAVGQIPHPLGWLVPQQGQPMYSLPPGGFRHPYPALAMNASM
SSLVSSRFSPHMVAPAHPGLPTSGIPHPAIVSPIVKQEPAPPSLSPAVSVKSPVTVKKEEEKKPHVKKPL
NAFMLYMKEMRAKVVAECTLKESAAINQILGRKWHNLSREEQAKYYELARKERQLHSQLYPTWSARDNYG
KKKKRKREKQLSQTQSQQQVQEAEGALASKSKKPCVQYLPPEKPCDSPASSHGSMLDSPATPSAALASPA
APAATHSEQAQPLSLTTKPETRAQLALHSAAFLSAKAAASSSGQMGSQPPLLSRPLPLGSMPTALLASPP
SFPATLHAHQALPVLQAQPLSLVTKSAH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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