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Report for CCDS1962.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1962.1 Public Homo sapiens 2 REG3G 24 110 108 CCDS HistoryNCBI Gene:130120Re-query CCDS DB by CCDS ID:1962.1Re-query CCDS DB by GeneID:130120See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1962.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000272324.10 ENSP00000272324.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000272324.10Link to Ensembl Protein Viewer:ENSP00000272324.5Re-query CCDS DB by Nucleotide ID:ENST00000272324Re-query CCDS DB by Protein ID:ENSP00000272324
Original member Current member EBI ENST00000393897.6 ENSP00000377475.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000393897.6Link to Ensembl Protein Viewer:ENSP00000377475.2Re-query CCDS DB by Nucleotide ID:ENST00000393897Re-query CCDS DB by Protein ID:ENSP00000377475
Original member Current member NCBI NM_001008387.3 NP_001008388.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001008387.3Link to Protein Sequence:NP_001008388.1Re-query CCDS DB by Nucleotide ID:NM_001008387Re-query CCDS DB by Protein ID:NP_001008388Link to BLAST:NP_001008388.1
Original member Current member NCBI NM_198448.4 NP_940850.1 Accepted alive Link to Nucleotide Sequence:NM_198448.4Link to Protein Sequence:NP_940850.1Re-query CCDS DB by Nucleotide ID:NM_198448Re-query CCDS DB by Protein ID:NP_940850Link to BLAST:NP_940850.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001008388.1 175 Q6UW15-1 175 100% 0 0
NP_940850.1 175 Q6UW15-1 175 100% 0 0

Chromosomal Locations for CCDS 1962.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 79026094 79026169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79026713 79026831 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79027034 79027171 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79027807 79027933 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 79028209 79028276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (528 nt):
ATGCTGCCTCCCATGGCCCTGCCCAGTGTGTCCTGGATGCTGCTTTCCTGCCTCATTCTCCTGTGTCAGG
TTCAAGGTGAAGAAACCCAGAAGGAACTGCCCTCTCCACGGATCAGCTGTCCCAAAGGCTCCAAGGCCTA
TGGCTCCCCCTGCTATGCCTTGTTTTTGTCACCAAAATCCTGGATGGATGCAGATCTGGCTTGCCAGAAG
CGGCCCTCTGGAAAACTGGTGTCTGTGCTCAGTGGGGCTGAGGGATCCTTCGTGTCCTCCCTGGTGAGGA
GCATTAGTAACAGCTATTCATACATCTGGATTGGGCTCCATGACCCCACACAGGGCTCTGAGCCTGATGG
AGATGGATGGGAGTGGAGTAGCACTGATGTGATGAATTACTTTGCATGGGAGAAAAATCCCTCCACCATC
TTAAACCCTGGCCACTGTGGGAGCCTGTCAAGAAGCACAGGATTTCTGAAGTGGAAAGATTATAACTGTG
ATGCAAAGTTACCCTATGTCTGCAAGTTCAAGGACTAG

Translation (175 aa):
MLPPMALPSVSWMLLSCLILLCQVQGEETQKELPSPRISCPKGSKAYGSPCYALFLSPKSWMDADLACQK
RPSGKLVSVLSGAEGSFVSSLVRSISNSYSYIWIGLHDPTQGSEPDGDGWEWSSTDVMNYFAWEKNPSTI
LNPGHCGSLSRSTGFLKWKDYNCDAKLPYVCKFKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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