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Report for CCDS19596.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19596.1 Public Mus musculus 5 Rab35 23 108 98 CCDS HistoryNCBI Gene:77407Re-query CCDS DB by CCDS ID:19596.1Re-query CCDS DB by GeneID:77407See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 19596.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031492.14 ENSMUSP00000031492.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031492.14Link to Ensembl Protein Viewer:ENSMUSP00000031492.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000031492Re-query CCDS DB by Protein ID:ENSMUSP00000031492
Original member Current member NCBI NM_198163.1 NP_937806.1 Accepted alive Link to Nucleotide Sequence:NM_198163.1Link to Protein Sequence:NP_937806.1Re-query CCDS DB by Nucleotide ID:NM_198163Re-query CCDS DB by Protein ID:NP_937806Link to BLAST:NP_937806.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_937806.1 201 Q6PHN9 201 100% 0 0

Chromosomal Locations for CCDS 19596.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 115632147 115632198 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115637716 115637766 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115640080 115640203 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115643368 115643492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115643575 115643699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 115645633 115645761 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (606 nt):
ATGGCCCGGGACTACGACCACCTCTTCAAGCTGCTCATCATCGGCGACAGCGGTGTGGGCAAGAGCAGCT
TGCTGTTACGATTCGCAGACAACACCTTCTCAGGCAGCTACATCACCACAATCGGAGTGGATTTCAAGAT
TCGGACTGTGGAGATCAACGGGGAGAAGGTGAAGCTGCAGATCTGGGACACGGCAGGGCAGGAGCGCTTC
CGCACCATCACCTCTACGTATTATCGGGGGACCCATGGGGTCATTGTGGTTTACGACGTCACTAGTGCCG
AGTCCTTTGTCAACGTCAAGCGATGGCTTCATGAAATCAACCAGAACTGTGACGATGTGTGCCGAATATT
AGTGGGCAATAAGAATGATGACCCTGAGCGGAAGGTGGTAGAGACAGAAGATGCCTACAAATTTGCCGGG
CAGATGGGGATCCAGCTCTTTGAGACCAGTGCCAAGGAGAACGTCAATGTGGAAGAGATGTTCAACTGTA
TCACAGAGCTGGTTCTGCGAGCAAAGAAAGACAACTTGGCGAAACAGCAGCAGCAACAACAGAACGATGT
GGTGAAGCTCACCAAAAACAGTAAACGAAAGAAACGCTGCTGCTAA

Translation (201 aa):
MARDYDHLFKLLIIGDSGVGKSSLLLRFADNTFSGSYITTIGVDFKIRTVEINGEKVKLQIWDTAGQERF
RTITSTYYRGTHGVIVVYDVTSAESFVNVKRWLHEINQNCDDVCRILVGNKNDDPERKVVETEDAYKFAG
QMGIQLFETSAKENVNVEEMFNCITELVLRAKKDNLAKQQQQQQNDVVKLTKNSKRKKRCC


Links Key
 Links to:   History report
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 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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