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Report for CCDS19524.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19524.1 Public Mus musculus 5 Pxmp2 23 108 98 CCDS HistoryNCBI Gene:19301Re-query CCDS DB by CCDS ID:19524.1Re-query CCDS DB by GeneID:19301See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19524.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000031472.11 ENSMUSP00000031472.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000031472.11Link to Ensembl Protein Viewer:ENSMUSP00000031472.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000031472Re-query CCDS DB by Protein ID:ENSMUSP00000031472
Original member NCBI NM_008993.2 NP_033019.2 Updated not alive Link to Nucleotide Sequence:NM_008993.2Link to Protein Sequence:NP_033019.2Re-query CCDS DB by Nucleotide ID:NM_008993Re-query CCDS DB by Protein ID:NP_033019
Current member NCBI NM_008993.3 NP_033019.2 Accepted alive Link to Nucleotide Sequence:NM_008993.3Link to Protein Sequence:NP_033019.2Re-query CCDS DB by Nucleotide ID:NM_008993Re-query CCDS DB by Protein ID:NP_033019Link to BLAST:NP_033019.2

Chromosomal Locations for CCDS 19524.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 110274560 110274628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110277655 110277774 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110281197 110281359 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110283646 110283753 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 110285884 110286005 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (582 nt):
ATGGCACCTGCGGCGTCCAGGCTGCGGGTGGAATCCGAGCTCGGGTCGCTTCCCAAGCGAGCGCTCGCCC
AATACTTGCTGCTCCTAAAGCTCTACCCGGTGCTCACCAAAGCAGTCAGCAGCGGCATTTTGTCAGCCCT
TGGAAACCTTCTGGCCCAGACGATTGAGAAGCGGAAAAAAGACTCTCAAAATCTAGAAGTCAGTGGGCTT
CTCAGATATTTAGTTTATGGGTTGTTTGTCACAGGTCCACTGAGTCACTACCTCTACCTCTTCATGGAAT
ACTCGGTCCCTCCTGAGGTTCCCTGGGCCAGCGTCAAGAGGCTCCTGCTGGATCGCCTGTTCTTTGCCCC
AACTTTTCTGCTGCTGTTCTTCTTCGTCATGAACTTGCTGGAGGGGAAAAACGTCAGTGTCTTTGTTGCC
AAGATGAGGAGTGGCTTCTGGCCCGCACTGCAAATGAACTGGAGGATGTGGACACCTTTGCAGTTCATTA
ACATCAACTATGTGCCCCTGCAGTTCCGGGTGCTCTTTGCCAACATGGCAGCTCTGTTCTGGTATGCCTA
CCTGGCGTCTCTGGGGAAGTGA

Translation (193 aa):
MAPAASRLRVESELGSLPKRALAQYLLLLKLYPVLTKAVSSGILSALGNLLAQTIEKRKKDSQNLEVSGL
LRYLVYGLFVTGPLSHYLYLFMEYSVPPEVPWASVKRLLLDRLFFAPTFLLLFFFVMNLLEGKNVSVFVA
KMRSGFWPALQMNWRMWTPLQFININYVPLQFRVLFANMAALFWYAYLASLGK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
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