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Report for CCDS19492.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19492.1 Public Mus musculus 5 Gbp6 23 108 98 CCDS HistoryNCBI Gene:100702Re-query CCDS DB by CCDS ID:19492.1Re-query CCDS DB by GeneID:100702See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19492.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000196520.1 ENSMUSP00000142518.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000196520.1Link to Ensembl Protein Viewer:ENSMUSP00000142518.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000196520Re-query CCDS DB by Protein ID:ENSMUSP00000142518
Original member Current member NCBI NM_194336.2 NP_919317.2 Accepted alive Link to Nucleotide Sequence:NM_194336.2Link to Protein Sequence:NP_919317.2Re-query CCDS DB by Nucleotide ID:NM_194336Re-query CCDS DB by Protein ID:NP_919317Link to BLAST:NP_919317.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_919317.2 611 A0A0G2JDV3 611 99.8363% 0 1

Chromosomal Locations for CCDS 19492.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 105273102 105273287 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105274187 105274380 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105274709 105274811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105275753 105275959 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105276627 105276907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105277697 105277942 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105280075 105280271 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105280455 105280564 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105288927 105289054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 105290837 105291020 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1836 nt):
ATGACCCAACCACAAATGGCTCCCATTTGCCTTGTGGAAAACCACAATGAACAGCTGTCAGTGAACCAGG
AAGCCATAGAGATTCTGGACAAGATTTCTCAGCCAGTGGTAGTCGTGGCTATTGTTGGATTGTACCGTAC
AGGGAAGTCCTATTTGATGAACTGTTTGGCGGGACAGAATCACGGCTTTCCTCTGGGCTCCACCGTGCAG
TCTCAGACCAAGGGCATCTGGATGTGGTGCATGCCACACCCCACCAAGCCAGAGCACACCCTGGTCCTCC
TGGACACTGAGGGCCTGGGGGATGTGGAAAAGGGTGATCCTAAGAACGACTTGTGGATCTTTGCCCTCAG
CGTGCTTCTGAGCAGCACCTTCATCTACAACAGCATGATCACCATCAACCACCAGGCCCTGGAGCAGCTG
CATTATGTCACAGAACTCACAGAGCTGATCAGAGCAAAGTCTTCCCCAAATCCTGCTGGAATAAAGAATT
CCACAGAGTTTGTGAGTTTCTTTCCAGACTTTGTCTGGACTGTTCGGGATTTCATGCTGGAGCTGAAGTT
AAATGGGGAAGACATCACAAGTGATGACTACCTGGAGAATGCCTTGAAGCTGATCCCAGGTGACAAACCC
AGAATGCAAGCATCCAATTCATGCAGGGAATGCATCAGACTTTTCTTTCCTAACCGGAAGTGTTTTGTCT
TTGACCGGCCAACGCATGACAAAGAACTTTTACAAAAACTTGATTCTATCACAGAAGACCAACTGGATCC
TAAGTTCCAGGAAGTAACAAAGGCTTTTGTTTCTTACATCTTCACTTATGCCAAGATCAAGACCCTAAAA
GAGGGAATTAAGGTCACTGGGAATAGACTAGGGATTCTGGTGACAACCTATGTGAATGCCATCAACAGTG
GAGCAGTGCCTTGTCTGGATGATGCTGTGACAACTCTGGCCCAGCGTGAGAACTCAGTAGCTGTGCAGAA
AGCAGCCGACCACTATAGTGAGCAGATGGCCCAGCGACTGAGGCTTCCTACAGAAACGCTCCAGGAGCTG
CTGGATGTGCATGCAGCCTGCGAGAAGGAAGCCATGGCTGTCTTCATGGAGCATTCCTTCAAGGACGAAA
ATCAGCAATTCCTGAAGAAGCTGGTGGAATTAATAGGAGAGAACAAAGAGCTTTTCCTGTCGAAGAATGA
AGAGGCATCAAATAAATACTGTCAAGAAGAACTGGATCGACTTTCAAAGGATTTTATGGAAAATATTTCA
ACATTTTTTGTTCCTTGTGGACACAAGCTTTACATGGACAAGAGGGAGAAGATTGAACATGACTACTGGC
AGGTTCCCAGGAAAGGGGTGAAGGCAAGTGAAGTCTTCCAGAGCTTTCTGCAGTCACAGGCCTTCATCGA
GAGTTCCATCTTGCAGGCAGATACAGCGCTCACTGCTGGGGAGAAGGCCATTGCAGAGGAGCGTGCCCAG
AAGGTGGCGGCAGAGAAGGAGCAAGAGCTGCTAAGACAGAAGCAGAAGGAGCAGCAGGAGTATATGGAGG
CTCAAGAGAAAAGTCACAAGGAAAACCTAGAGCAACTGAGAAGGAAGCTGGAGCAGGAGAGAGAGCAGGA
CATCAAAGACCATGATATGATGCTGAAGAAGCTAATGAAGGATCAAAAGGCTTTCCTTGAGGAAGGATTT
AAGAAGAAAGCTGAAGAAATGAACAAAGAGATACAGCAACTGAGAGATGTCATCAAGGATAAGAAAAGAA
ACACTGATCGAATTAAGGAGGCTCTCTTAAATGGATTTTCTACAGTTCTTTTTCATTACCTTGTCCGTTA
TCTAAAGCATTTATGA

Translation (611 aa):
MTQPQMAPICLVENHNEQLSVNQEAIEILDKISQPVVVVAIVGLYRTGKSYLMNCLAGQNHGFPLGSTVQ
SQTKGIWMWCMPHPTKPEHTLVLLDTEGLGDVEKGDPKNDLWIFALSVLLSSTFIYNSMITINHQALEQL
HYVTELTELIRAKSSPNPAGIKNSTEFVSFFPDFVWTVRDFMLELKLNGEDITSDDYLENALKLIPGDKP
RMQASNSCRECIRLFFPNRKCFVFDRPTHDKELLQKLDSITEDQLDPKFQEVTKAFVSYIFTYAKIKTLK
EGIKVTGNRLGILVTTYVNAINSGAVPCLDDAVTTLAQRENSVAVQKAADHYSEQMAQRLRLPTETLQEL
LDVHAACEKEAMAVFMEHSFKDENQQFLKKLVELIGENKELFLSKNEEASNKYCQEELDRLSKDFMENIS
TFFVPCGHKLYMDKREKIEHDYWQVPRKGVKASEVFQSFLQSQAFIESSILQADTALTAGEKAIAEERAQ
KVAAEKEQELLRQKQKEQQEYMEAQEKSHKENLEQLRRKLEQEREQDIKDHDMMLKKLMKDQKAFLEEGF
KKKAEEMNKEIQQLRDVIKDKKRNTDRIKEALLNGFSTVLFHYLVRYLKHL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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