NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq


Report for CCDS1944.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
1944.1 Public Homo sapiens 2 MRPL53 24 110 108 CCDS HistoryNCBI Gene:116540Re-query CCDS DB by CCDS ID:1944.1Re-query CCDS DB by GeneID:116540See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 1944.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000258105.8 ENSP00000258105.7 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000258105.8Link to Ensembl Protein Viewer:ENSP00000258105.7Re-query CCDS DB by Nucleotide ID:ENST00000258105Re-query CCDS DB by Protein ID:ENSP00000258105
Original member Current member NCBI NM_053050.5 NP_444278.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_053050.5Link to Protein Sequence:NP_444278.1Re-query CCDS DB by Nucleotide ID:NM_053050Re-query CCDS DB by Protein ID:NP_444278Link to BLAST:NP_444278.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_444278.1 112 Q96EL3 112 100% 0 0

Chromosomal Locations for CCDS 1944.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 74472119 74472252 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74472358 74472470 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 74472569 74472660 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (339 nt):
ATGGCAGCTGCCTTGGCTCGGCTTGGTCTGCGGCCTGTCAAACAGGTTCGGGTTCAGTTCTGTCCCTTCG
AGAAAAACGTGGAATCGACGAGGACCTTCCTGCAGACGGTGAGCAGTGAGAAGGTCCGCTCCACTAATCT
CAACTGCTCAGTGATTGCGGACGTGAGGCATGACGGCTCCGAGCCCTGCGTGGACGTGCTGTTCGGAGAC
GGGCATCGCCTGATTATGCGCGGCGCTCATCTCACCGCTCTGGAAATGCTCACCGCCTTCGCCTCCCACA
TCCGGGCCAGGGACGCGGCGGGCAGCGGGGACAAGCCGGGCGCTGATACTGGTCGCTGA

Translation (112 aa):
MAAALARLGLRPVKQVRVQFCPFEKNVESTRTFLQTVSSEKVRSTNLNCSVIADVRHDGSEPCVDVLFGD
GHRLIMRGAHLTALEMLTAFASHIRARDAAGSGDKPGADTGR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH