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Report for CCDS19427.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19427.1 Public Mus musculus 5 G3bp2 23 108 98 CCDS HistoryNCBI Gene:23881Re-query CCDS DB by CCDS ID:19427.1Re-query CCDS DB by GeneID:23881See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19427.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000169094.7 ENSMUSP00000128244.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000169094.7Link to Ensembl Protein Viewer:ENSMUSP00000128244.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000169094Re-query CCDS DB by Protein ID:ENSMUSP00000128244
Original member Current member EBI ENSMUST00000164378.7 ENSMUSP00000128353.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000164378.7Link to Ensembl Protein Viewer:ENSMUSP00000128353.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000164378Re-query CCDS DB by Protein ID:ENSMUSP00000128353
Original member Current member EBI ENSMUST00000202258.3 ENSMUSP00000144456.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000202258.3Link to Ensembl Protein Viewer:ENSMUSP00000144456.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000202258Re-query CCDS DB by Protein ID:ENSMUSP00000144456
Original member Current member NCBI NM_001080794.2 NP_001074263.1 Accepted alive Link to Nucleotide Sequence:NM_001080794.2Link to Protein Sequence:NP_001074263.1Re-query CCDS DB by Nucleotide ID:NM_001080794Re-query CCDS DB by Protein ID:NP_001074263Link to BLAST:NP_001074263.1
Original member Current member NCBI NM_001080797.2 NP_001074266.1 Accepted alive Link to Nucleotide Sequence:NM_001080797.2Link to Protein Sequence:NP_001074266.1Re-query CCDS DB by Nucleotide ID:NM_001080797Re-query CCDS DB by Protein ID:NP_001074266Link to BLAST:NP_001074266.1
Original member Current member NCBI NM_001359195.1 NP_001346124.1 Accepted alive Link to Nucleotide Sequence:NM_001359195.1Link to Protein Sequence:NP_001346124.1Re-query CCDS DB by Nucleotide ID:NM_001359195Re-query CCDS DB by Protein ID:NP_001346124Link to BLAST:NP_001346124.1
Original member Current member NCBI NM_001359196.1 NP_001346125.1 Accepted alive Link to Nucleotide Sequence:NM_001359196.1Link to Protein Sequence:NP_001346125.1Re-query CCDS DB by Nucleotide ID:NM_001359196Re-query CCDS DB by Protein ID:NP_001346125Link to BLAST:NP_001346125.1
Original member Current member NCBI NM_011816.4 NP_035946.2 Accepted alive Link to Nucleotide Sequence:NM_011816.4Link to Protein Sequence:NP_035946.2Re-query CCDS DB by Nucleotide ID:NM_011816Re-query CCDS DB by Protein ID:NP_035946Link to BLAST:NP_035946.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074263.1 482 P97379-1 482 100% 0 0
NP_001074266.1 482 P97379-1 482 100% 0 0
NP_001346124.1 482 P97379-1 482 100% 0 0
NP_001346125.1 482 P97379-1 482 100% 0 0
NP_035946.2 482 P97379-1 482 100% 0 0

Chromosomal Locations for CCDS 19427.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 92054781 92055053 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92055384 92055502 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92056269 92056397 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92057968 92058070 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92063337 92063435 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92064325 92064505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92065752 92065854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92066492 92066582 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92068325 92068498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92070357 92070438 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 92073160 92073254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1449 nt):
ATGGTTATGGAGAAGCCCAGTCCGCTGCTTGTGGGGCGGGAGTTTGTGAGGCAATATTATACTTTGCTGA
ATAAAGCTCCCGAGTATTTGCACAGGTTCTATGGCAGGAATTCCTCCTATGTTCATGGTGGAGTGGATGC
CAGTGGAAAGCCCCAGGAAGCAGTTTATGGCCAAAATGATATACACCACAAAGTGTTATCTCTGAACTTC
AGTGAATGTCATACCAAAATTCGTCATGTGGATGCTCATGCAACCTTGAGTGATGGTGTAGTGGTACAGG
TCATGGGCTTGCTGTCTAACAGTGGACAGCCTGAGAGGAAGTTTATGCAAACCTTTGTTCTGGCTCCAGA
AGGATCTGTTCCAAATAAATTTTATGTTCACAATGATATGTTTCGTTATGAAGATGAAGTGTTTGGTGAT
TCTGAACCAGAACTTGATGAAGAGTCAGAAGATGAAGTGGAAGAGGAGCAAGAAGACAGGCAGCCGTCTC
CTGAACCTGTGCAAGAGAATGCTAACAGCGCTTACTATGACGCACACCCCGTGACTAATGGCATAGAGGA
GCCTTTAGAAGAATCCTCTCATGAACCTGAGCCTGAGCCAGAATCTGAAACAAAGACTGAAGAGCTGAAA
CCACAAGTGGAGGAGAAACACTTGGAAGAGCTGGAGGAGAAGTCGGCCACTCCTCCTCCTGCTGAGCCTG
CTTCTCTGCCTCAGGAACCGCCAAAGGCTTTCTCCTGGGCTTCAGTGACCAGTAAAAACCTGCCTCCTAG
TGGTACTGTTTCTTCCTCTGGAATTCCACCCCATGTTAAAGCACCAGTCTCACAGCCGAGGGTTGATGCT
AAGCCAGAAGTTCAGTCTCAGCCACCGCGTGTACGGGAACAGCGACCTCGAGAGCGGCCTGGTTTCCCTC
CTCGAGGACCAAGGCCAGGCAGAGGAGATATGGAACAGAATGACTCTGACAACCGGAGAATAATTCGCTA
TCCGGACAGTCATCAGCTTTTCGTTGGTAACTTGCCTCATGATATTGATGAAAATGAACTGAAAGAATTC
TTTATGAGTTTTGGAAACGTTGTGGAACTTCGCATCAATACCAAGGGTGTTGGGGGAAAACTTCCAAATT
TTGGTTTTGTGGTTTTTGATGACTCTGAACCAGTTCAGAGAATCTTAATTGCAAAACCAATTATGTTTCG
AGGAGAAGTACGTTTAAATGTGGAAGAGAAAAAAACAAGAGCTGCCAGAGAGCGAGAAACCAGAGGTGGT
GGCGATGACCGCAGGGATATCAGGCGCAATGATCGGGGTCCTGGTGGTCCACGTGGAATTGTGGGTGGTG
GAATGATGCGTGATCGTGACGGAAGAGGGCCACCTCCACGAGGTGGCATGACACAGAAACTTGGTTCTGG
AAGAGGAACCGGGCAAATGGAAGGTCGCTTCACAGGACAGCGTCGTTGA

Translation (482 aa):
MVMEKPSPLLVGREFVRQYYTLLNKAPEYLHRFYGRNSSYVHGGVDASGKPQEAVYGQNDIHHKVLSLNF
SECHTKIRHVDAHATLSDGVVVQVMGLLSNSGQPERKFMQTFVLAPEGSVPNKFYVHNDMFRYEDEVFGD
SEPELDEESEDEVEEEQEDRQPSPEPVQENANSAYYDAHPVTNGIEEPLEESSHEPEPEPESETKTEELK
PQVEEKHLEELEEKSATPPPAEPASLPQEPPKAFSWASVTSKNLPPSGTVSSSGIPPHVKAPVSQPRVDA
KPEVQSQPPRVREQRPRERPGFPPRGPRPGRGDMEQNDSDNRRIIRYPDSHQLFVGNLPHDIDENELKEF
FMSFGNVVELRINTKGVGGKLPNFGFVVFDDSEPVQRILIAKPIMFRGEVRLNVEEKKTRAARERETRGG
GDDRRDIRRNDRGPGGPRGIVGGGMMRDRDGRGPPPRGGMTQKLGSGRGTGQMEGRFTGQRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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