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Report for CCDS19422.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
19422.1 Public Mus musculus 5 Btc 23 108 98 CCDS HistoryNCBI Gene:12223Re-query CCDS DB by CCDS ID:19422.1Re-query CCDS DB by GeneID:12223See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 19422.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000121044.5 ENSMUSP00000112765.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000121044.5Link to Ensembl Protein Viewer:ENSMUSP00000112765.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000121044Re-query CCDS DB by Protein ID:ENSMUSP00000112765
Original member Current member NCBI NM_007568.5 NP_031594.1 Accepted alive Link to Nucleotide Sequence:NM_007568.5Link to Protein Sequence:NP_031594.1Re-query CCDS DB by Nucleotide ID:NM_007568Re-query CCDS DB by Protein ID:NP_031594Link to BLAST:NP_031594.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_031594.1 177 Q05928 177 100% 0 0

Chromosomal Locations for CCDS 19422.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 5 (NC_000071.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 91360748 91360853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91362305 91362451 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91366121 91366238 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91376914 91377012 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 91402658 91402721 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (534 nt):
ATGGACCCAACAGCCCCGGGTAGCAGTGTCAGCTCCCTGCCGCTGCTCCTGGTCCTTGCCCTGGGTCTTG
CAATTCTCCACTGTGTGGTAGCAGATGGGAACACAACCAGAACACCAGAAACCAATGGCTCTCTTTGTGG
AGCTCCTGGGGAAAACTGCACAGGTACCACCCCTAGACAGAAAGTGAAAACCCACTTCTCTCGGTGCCCC
AAGCAGTACAAGCATTACTGCATCCATGGGAGATGCCGCTTCGTGGTGGACGAGCAAACTCCCTCCTGCA
TCTGTGAGAAAGGCTACTTTGGGGCTCGGTGTGAGCGAGTGGACCTGTTTTACCTCCAGCAGGACCGGGG
GCAGATCCTGGTGGTCTGCTTGATAGTGGTCATGGTGGTGTTCATCATTTTAGTCATCGGCGTCTGCACC
TGCTGTCATCCTCTTCGGAAACATCGTAAAAAAAAGAAGGAAGAGAAAATGGAGACTTTGGATAAAGATA
AAACTCCCATAAGTGAAGATATTCAAGAGACCAATATTGCTTAA

Translation (177 aa):
MDPTAPGSSVSSLPLLLVLALGLAILHCVVADGNTTRTPETNGSLCGAPGENCTGTTPRQKVKTHFSRCP
KQYKHYCIHGRCRFVVDEQTPSCICEKGYFGARCERVDLFYLQQDRGQILVVCLIVVMVVFIILVIGVCT
CCHPLRKHRKKKKEEKMETLDKDKTPISEDIQETNIA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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